Detailed information on CNT30107329


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004656, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696552Oryza longistaminataOryza sativa100.234.6198.77489forward
CNT30555391Oryza longistaminataOryza glaberrima100.242.4898.36489forward
CNT30370102Oryza longistaminataOryza glumipatula100.217.7899.18489forward
CNT30117626Oryza longistaminataOryza nivara10033.499.39488forward

Expression of CNT30107329

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MMYAVARRSCSYDGNCEQDRPSNPFFFPDEFVIWICCWNRLKSICNSTFSFPIIYVCIAESDVKRGIDSV*

>peptide 2 (29 aa)
MLWPEEVAPMMEIVSKTGPRILFFSLMNL*

>peptide 3 (34 aa)
RIVLIWNSTPLMTTLIRQCELCISCSHEQYLFEK*

Sequence

>CNT30107329
CGAGGATCGTTCTAATTTGGAACTCAACTCCTCTGATGACAACTTTAATCAGGCAGTGTGAATTATGCATTTCTTGTTCTCATGAACAATATTTGTTTGA
AAAGTGAAAGATCGGAGGTATGTTTTGCCACGGTGGATGAACAGAAAGCCCGGTGAGGATGGCAAACATGGAGTGAAGAGGGTATGATGTATGCTGTGGC
CAGAAGAAGTTGCTCCTATGATGGAAATTGTGAGCAAGACAGGCCCTCGAATCCTTTTTTTTTCCCTGATGAATTTGTAATTTGGATATGCTGCTGGAAT
CGGTTGAAATCTATTTGTAACTCCACTTTCTCATTTCCCATCATATATGTATGCATTGCTGAAAGTGATGTGAAGAGGGGAATAGATAGCGTGTAGCCTG
GCAGACTATGGATCATTGGATTGCATCTATGTTTCCGATGGTCTTGCGGGTTTGAGACTTTGAGCTTGAGAATGTATTTCTATTTTTG