Detailed information on CNT30107323


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000218, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553269Oryza longistaminataOryza glaberrima86.2576.4795.181368forward
CNT30369450Oryza longistaminataOryza glumipatula79.1344.7795.71255forward

Expression of CNT30107323

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MCGIRYYLELFPQIEGRCLIHVWYLIPKTLSG

>peptide 2 (29 aa)
MTKLMNIGMSWIAGKAYIYCSKINMNLFE*

>peptide 3 (50 aa)
MTGVSQPVLSLKTSGTPELLSLLITLRSERMRMRVHGTGATDVSNRKALP*

>peptide 4 (40 aa)
MLLHLKHQAFYFYILCLLQVIVILLKYYLFIHSLLNIIAC*

>peptide 5 (97 aa)
PIHQSAGSPLAFPSSFSRFSVKQREERRREEEEGKEKEKGRLTEFIIFWRQPVVFRGSDNQVAYLGVICVGARQVIIPPLEHNYPTFYISILCISHT*

>peptide 6 (59 aa)
PHPPERRQPARLPLFLLSVLCETERREKTGGRRRKRKRKRKTDRVYYILEATCGISRIR*

Sequence

>CNT30107323
TCCCCATCCACCAGAGCGCCGGCAGCCCGCTCGCCTTCCCCTCTTCCTTCTCTCGGTTCTCTGTGAAACAGAGAGAAGAGAGAAGACGGGAGGAAGAAGA
AGGAAAAGAAAAAGAAAAAGGAAGACTGACAGAGTTTATTATATTTTGGAGGCAACCTGTGGTATTTCGAGGATCAGATAATCAGGTTGCCTATCTCGGA
GTTATTTGCGTTGGAGCAAGGCAAGTTATTATTCCTCCCCTTGAACATAATTATCCTACATTCTATATCTCTATTCTATGCATTAGTCATACATGATTTT
GAATGCATAACCTGAACATAGCAAACCATATATGCTAGCTTTGCTTAGCCCTGCCTAGTTAGTCTGCATAAAAATATAATGAACTTAGATTGGGACAGTA
CGTAGGAATTGGTTGATTTCCGGGTGGCTAGTACTGTCTCAGTCGATATAGTTATTACCAAGTACTTATGTCAAACGAACGAGTACGACCGCAATTCTAG
AATGGGGACAGACCTTGCAAAGTAGGTTATCTAGCAAAGGTGGTACCTCTGTACAGTGGTTCTTATTTAAGTCCTCGCGCAGGAGGCAAACATATGCCGC
GAAGGGCAAATATAACATTTACCGAGGCGCAGGTAAATGATTTGTTGAGCTCAAGTGTGTGTGTATTGTGAAAACCTGGTTGAGATGACGGGGGTCTCTC
AACCAGTTCTCTCTCTAAAAACCTCGGGAACGCCAGAACTCCTCTCGCTGCTGATAACGTTACGTTCAGAGCGCATGAGGATGAGAGTTCATGGAACAGG
TGCCACTGATGTTAGTAACCGAAAAGCTTTGCCATGACTAAGCTAATGAATATTGGCATGTCATGGATTGCGGGTAAAGCGTACATTTACTGCAGTAAAA
TAAACATGAATCTATTCGAATAGCCGTGCTCACGGAATTGAGTATCGGGACTCATATGGTACTTTGGTTAGAAACCTAATTCAAGATTTTACTAAATGCT
GCTGCATTTAAAACATCAGGCTTTCTATTTCTATATTCTCTGCCTTCTGCAAGTAATCGTAATCCTACTCAAATATTACCTTTTCATACATTCATTACTG
AATATAATAGCTTGCTGAGTACGTTGTACTCACCCTTAATTCAACCCCCTTTTTCCTGAGTTAAATTGAAGTTCTTGCCGAAGCCAGGAGTTCAATCATA
TAAGTTAGTCTTATTTCAACCTAGTTTTCAAATCTAGATTAGTTAGATGGTTTAAGTCTATAGCAAAATATTAGGGTTAAGTCATTTTATAGCTTCTGCT
ATAATAGTTAGCCACAATCTTGTAAATTCCCCTATTATTTTATGTAATAATATCTCCTTTGGAGCCTTGTTTAAATGTACGCAATGAAGATCTAGATTGT
TGAAGCTGTATCAATCTACTGATCCAGGGCTTGATACAGTTAAACACGTCGGTTTCCGAATCTTTAGTTTTGGGAGCCGACACTTGTGCTATGTGTGGTA
TCAGGTACTACCTAGAGTTGTTTCCACAGATTGAAGGTAGGTGCTTGATACATGTCTGGTACTTGATACCAAAAACACTGTCGGGG