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Detailed information on CNT30107297


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695840Oryza longistaminataOryza sativa65.9243.02100296forward
CNT30675663Oryza longistaminataSetaria viridis33.1832.0490.6149forward
CNT30379122Oryza longistaminataManihot esculenta31.8532.6583.92143forward
CNT30402735Oryza longistaminataBeta vulgaris27.178.9685.25122forward
CNT30631186Oryza longistaminataVigna unguiculata25.8410.2486.21116forward
CNT30712266Oryza longistaminataGlycine max22.2736.588100forward
CNT30635894Oryza longistaminataCapsicum annuum33.852786.84152forward
CNT3095185Oryza longistaminataSolanum tuberosum29.188.885.5131forward
CNT30187559Oryza longistaminataSecale cereale27.8418.7493.6125forward
CNT30224612Oryza longistaminataHordeum vulgare22.9418.1393.2103forward
CNT30510308Oryza longistaminataSolanum lycopersicum28.5149.6187.5128forward
CNT30554828Oryza longistaminataOryza glaberrima86.6474.5299.49389forward
CNT30441217Oryza longistaminataAegilops tauschii32.5219.6593.84146forward
CNT30250974Oryza longistaminataAvena sativa30.2931.6392.65136forward
CNT30314068Oryza longistaminataCamelina sativa29.848.8485.07134forward
CNT30227528Oryza longistaminataAnanas comosus34.5221.3287.74155forward
CNT30625469Oryza longistaminataDaucus carota25.177.5583.19113forward
CNT30352420Oryza longistaminataEragrostis tef34.5225.0489.03155forward
CNT30362217Oryza longistaminataSorghum bicolor30.0725.8185.93135forward
CNT30371090Oryza longistaminataOryza glumipatula65.9261.4199.66296forward
CNT30704690Oryza longistaminataPrunus avium26.55.8686.55119forward
CNT30323609Oryza longistaminataAsparagus officinalis35.199.4985.44158forward
CNT30149846Oryza longistaminataBrachypodium distachyon49.6750.3487.44223forward
CNT30103353Oryza longistaminataOryza rufipogon65.9229.48100296forward
CNT30577638Oryza longistaminataOryza barthii10069.2997.55449forward
CNT30584451Oryza longistaminataEchinochloa crusgalli27.8423.3289.6125forward
CNT30594767Oryza longistaminataEragrostis curvula21.3837.2189.5896forward

Expression of CNT30107297

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MTTMALSRPPPSCSRRRRPPAAACRRQEGSLEEQHHQVLHRLVVLVSIGTLAELVHDGILRVDLHGLLARHVAGHA*

>peptide 2 (33 aa)
MSASGGQSRRAASPGPSQTCRSCQHRHACGARP*

Sequence

>CNT30107297
TACTATAAAAGGGCTAATGCAGAATAAGAAAATACAGATTCTGGATTAATTAACTAGCATATTTAAATTTAAAACGTAACTGTTTGAGCAAATACCACGA
AATGTTCAGGCGCTAAGATACGGCAATACCGATACATCCAGCATAGCAAAAATGGCGAAGAGCACAGAGTCAGATAAAGCTATAGAGAACTAGGGCTCCA
GGAGATGGGGGCCGAATGACAACCATGGCGCTTAGTCGACCTCCTCCATCTTGCTCTCGCCGGCGTCGTCCTCCAGCGGCGGCATGTCGGCGTCAGGAGG
GCAGTCTCGAAGAGCAGCATCACCAGGTCCTTCACAGACTTGTCGTTCTTGTCAGCATCGGCACGCTTGCGGAGCTCGTCCATGATGGAATTCTCCGGGT
TGATCTCCATGGTCTTCTTGCTCGACATGTAGCCGGCCATGCTTGAGTC