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Detailed information on CNT30107294


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675788Oryza longistaminataSetaria viridis34.1921.9996.7793forward
CNT30517803Oryza longistaminataJuglans regia34.569.9284.0494forward
CNT30701953Oryza longistaminataQuercus lobata35.2934.7884.3896forward
CNT30377298Oryza longistaminataArabidopsis thaliana30.8833.7389.2984forward
CNT30282455Oryza longistaminataChenopodium quinoa29.415.7283.7580forward
CNT3071730Oryza longistaminataQuercus suber35.2923.6583.3396forward
CNT3043869Oryza longistaminataPrunus dulcis2513.4488.2468forward
CNT30566785Oryza longistaminataActinidia chinensis43.3844.3684.75118forward
CNT30311909Oryza longistaminataCamelina sativa35.2920.389.5896forward
CNT3061941Oryza longistaminataArabidopsis lyrata19.4920.3888.6853forward
CNT30468549Oryza longistaminataSaccharum spontaneum47.4356.0993.8129forward
CNT302051Oryza longistaminataZea mays27.9433.4892.1176forward
CNT30652736Oryza longistaminataRosa chinensis32.3515.287.588forward
CNT30351629Oryza longistaminataEragrostis tef47.0639.0294.53128forward
CNT30366950Oryza longistaminataSorghum bicolor36.7611.6895100forward
CNT30596757Oryza longistaminataOryza meridionalis38.645.2695.24105forward
CNT30371008Oryza longistaminataOryza glumipatula34.9338.4610095reverse complement
CNT30103405Oryza longistaminataOryza rufipogon76.198.5799.52207reverse complement
CNT30175658Oryza longistaminataVigna angularis34.1937.6587.193forward
CNT30558210Oryza longistaminataPanicum hallii47.0662.1492.97128forward

Expression of CNT30107294

Peptides detected in this lncRNA

>peptide 1 (48 aa)
GGVGDELAEEDLLVGVEGVDDEGQQLVDLGLEGERLGLRRHGFLLLCS*

>peptide 2 (44 aa)
MMRDSSWLISAWKANVSVSDAMASSSCAPEISGAWRGGEETRGG*

Sequence

>CNT30107294
TCGGAGGAGTTGGAGATGAGCTCGCGGAGGAAGATCTCCTTGTTGGAGTAGAAGGTGTTGATGATGAGGGACAGCAGCTGGTTGATCTCGGCCTGGAAGG
CGAACGTCTCGGTCTCCGACGCCATGGCTTCCTCCTCCTGTGCTCCTGAGATCTCGGGGGCGTGGAGAGGAGGAGAAGAAACGAGAGGCGGCTAGGGTTT
GGAGGGGTTTCCAAGAGGACGCGAGATGGAAGAGGAGGGAGAGTATTTAAGGGAACCTGTGGTTCTAGAAGC