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Detailed information on CNT30107264


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30180942Oryza longistaminataSecale cereale25.9620.789.8196forward
CNT30385545Oryza longistaminataTriticum turgidum24.919.2289.89188forward
CNT30240769Oryza longistaminataAvena sativa26.3625.4586.93199forward
CNT30601253Oryza longistaminataFraxinus excelsior6.2320.4393.6247forward
CNT30466191Oryza longistaminataSaccharum spontaneum26.3628.7689.45199forward
CNT30132778Oryza longistaminataLolium perenne25.9624.6588.27196forward
CNT3017302Oryza longistaminataZea mays26.2327.7388.89198forward
CNT3067371Oryza longistaminataLeersia perrieri48.2148.488.74364forward
CNT30342484Oryza longistaminataEragrostis tef25.8330.4290.77195forward
CNT30596127Oryza longistaminataOryza meridionalis83.3197.5294.59629forward
CNT30585288Oryza longistaminataEchinochloa crusgalli26.3639.4888.44199forward
CNT30603959Oryza longistaminataOryza punctata96.0394.989.93725forward

Expression of CNT30107264

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MFITEKPFSIPSLDAASLWWLCTCVCENRCLL*

>peptide 2 (51 aa)
MFVVIWTHSIVCDCCHIVSEKTALVCQVFAIIYPEFQIGFDHLIHRDTGSP*

>peptide 3 (68 aa)
MNWIGRKIHIYNVTVGLYMLDWWERYLFNILMLCLLWYILRYVLGFFQSNLKTILQGGNYLVQGRKLQ*

Sequence

>CNT30107264
ACTACTCCTTCCAGTTGCCACTGTTCCCCCTCTGAAAATCTGACACCCCACCGCTGCGCCGCTCCCTCCCTCCGGATCTGAGCGAGGTGATCTGCAGGTC
TCGGGTTCCTCGTGGAGGATGAACTGGATTGGGCGCAAGATCCACATCTACAATGTCACCGTCGGTCTCTACATGCTCGATTGGTGGGAGCGCTACCTCT
TCAATATATTGATGCTTTGCCTTCTATGGTACATTCTCCGGTATGTCCTTGGGTTCTTTCAGAGTAACCTGAAGACCATTTTGCAAGGTGGGAACTATCT
TGTGCAAGGCAGGAAATTGCAGTAAGCAAGTGAAATATTTTGACCAGTTTTAACATGTAATTCACCTGTTTATTTAGTTGTAAACTGAGCAACCAGAGAG
GAACTGATGAGGTATGTTTATTACTGAGAAGCCTTTTTCTATTCCTTCTCTAGATGCTGCAAGTCTTTGGTGGTTGTGTACTTGTGTATGTGAAAATAGA
TGTTTGTTGTAATTTGGACCCATAGTATTGTCTGTGATTGCTGTCACATTGTTTCTGAGAAAACCGCATTAGTATGCCAAGTATTTGCAATTATCTACCC
TGAATTTCAGATTGGATTCGATCATTTGATACACAGAGATACAGGTAGTCCGTAGTCCTTATTTGATACACTGAATTGTTGTACTGGTATTCATAATTTC
ATATTGACTATATAAAAGCAAAGCTGCAAGCCATTGCTCTGCTCTGCTGTAGGCG