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Detailed information on CNT30107211


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30137127Oryza longistaminataLolium perenne23.0325.3589.0473forward
CNT30101044Oryza longistaminataOryza rufipogon83.2860.6999.24264forward

Expression of CNT30107211

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MDRGLLDSREPLDTITTRLDDKMILTRIAKDNWPRWAPPISSSSSRRSRRRSR

>peptide 2 (40 aa)
YDMRTKLSNSFFSPCFLFHFIPIDSNKQFKQHNQSELNSW*

Sequence

>CNT30107211
TATATGATATGCGAACAAAACTTTCCAACTCTTTTTTTTCTCCTTGTTTTCTATTTCATTTCATTCCGATAGATAGCAACAAGCAGTTCAAACAACATAA
CCAAAGCGAACTCAATTCATGGTAACATCACGGACGAAGAACACCTAACACTGGATGGATGGATAGAGGGCTTCTCGACTCGAGAGAGCCACTGGACACG
ATAACGACTCGACTCGATGATAAGATGATTCTGACACGGATAGCTAAGGATAACTGGCCACGATGGGCCCCACCAATCAGTTCCTCCAGTTCCCGCCGGA
GTCGCCGCCGTAGCCGC