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Detailed information on CNT30107111


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30370025Oryza longistaminataOryza glumipatula90.1678.3197.34715forward
CNT3099740Oryza longistaminataOryza rufipogon58.1321.3494.58461forward
CNT30576114Oryza longistaminataOryza barthii93.8267.0397.45744forward
CNT30116461Oryza longistaminataOryza nivara93.8265.0997.31744forward

Expression of CNT30107111

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MGDWEPALLDVSLALILSPASTIYSANQVQEVLKFFDDTHVADLL*

>peptide 2 (80 aa)
NACFYSTTNICDIIVDLAAGNIHFYQQLAVLASLISLAHRWEIGSRHCSMSLSPSSYRPRQRYIAPTRSRKFLSSLMIPM*

Sequence

>CNT30107111
CTAACGCATGTTTTTATTCCACCACTAATATCTGCGATATCATCGTTGATCTAGCTGCTGGCAACATACATTTCTATCAGCAGCTAGCTGTCCTAGCTAG
CCTCATCAGTTTAGCGCATCGATGGGAGATTGGGAGCCGGCACTGCTCGATGTCTCTCTCGCCCTCATCTTATCGCCCGCGTCAACGATATATAGCGCCA
ACCAGGTCCAGGAAGTTCTTAAGTTCTTTGATGATACCCATGTAGCTGACCTTCTTTGATGATACTTTGTTCCCATATCTGATTGGTTGATATACATTGC
AATGTGTAGGCAACTAGGCACCAAACAAAGCAGTTGTTGTGTTCCTTTTGCATAGAGATTTTTACATCTCTGATATGACTCATGTTTCTGTTAATTATCT
CCTATCCCAGTCCACTTTCATGGGCTTTAAAGCTGCACTGCCAGTAAATTGAGGTGGTAAGCAGCCATCGAATCATCCGCTCCTAAAATTCTAAGCATTC
GTGAGTTCCTTGATGATCCCTGTTTGTTTCCTGTTGATCACAAGTTAATAGATGCTACACTAAGACCTTGACTTTGCAACCTTCAGTCTCTAATTGTCTG
CATGCATCATTTACTCCAGAGTTCTAATTAACAGGATTTTCAGGTGAAGGCCATCTGTGGATCCGAAATATATTGTTCTTTGGCTAAGATTTTAGGTCTG
GCTGTTTTTCTCCATTTCATATAAGCTTTTTGAAAATATCCCATATTAAATATTTCTATTTGAGAAACTATCTGGATACTTTGATTAACCCCC