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Detailed information on CNT30107081


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30689930Oryza longistaminataOryza sativa17.4926.8990.14213forward
CNT30595555Oryza longistaminataOryza meridionalis17.0834.992.79208forward
CNT3099604Oryza longistaminataOryza rufipogon17.0822.3792.31208forward
CNT30115832Oryza longistaminataOryza nivara17.0846.0291.83208forward

Expression of CNT30107081

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MCMRGLSLNTISFYDYSESIFSPLRKSYDLDLTGFWPELQSSANHKSRW*

>peptide 2 (35 aa)
MDEKREERSSLSPWCHKERMGTRCTHIKFYGMFGS*

>peptide 3 (67 aa)
MISNVAHIQSVFDSTLIPLLMSTACELSPVVELSPGNCCRTTWSGVVFRRRPCCSVILPPAHSRVHI*

>peptide 4 (67 aa)
MEWSGFPSEALLLRDSATSAFSSPHMTKHDEPIRLQFLLTAESDWPWLISMDIQSTVSQSPALTDFH*

>peptide 5 (51 aa)
MSRNGREKRRKEQLITVVSQGKDGYKVYTHQVLRNVRVIIIYVINNSVLLL*

Sequence

>CNT30107081
CCCGATTAATTTTTCAATTAAGGGCTGTTTAGGTTGTAATTTTTCATACATTTTGTGAGTTATTTGTTTACTGCCAAACTGAAAGGGTCTGCAAATTTTT
CAATGATTTCGAATGTGGCTCATATACAATCTGTTTTTGATTCCACCTTGATTCCCCTATTGATGTCAACAGCATGTGAATTATCTCCAGTGGTTGAATT
ATCTCCAGGAAATTGCTGCCGCACGACATGGAGTGGAGTGGTTTTCCGTCGGAGGCCTTGCTGCTCCGTGATTCTGCCACCAGCGCATTCTCGAGTCCAC
ATATGACAAAACACGACGAACCAATTCGATTGCAGTTCCTCCTGACAGCGGAAAGCGACTGGCCTTGGCTTATTTCAATGGACATACAAAGCACTGTATC
ACAATCGCCTGCACTGACAGATTTTCATTAGATTCTTCAGGGTCATGCAAGTATGGCCTGAGGATCTTTTGGACCAAAAGGGCAAGCCTCTTCACCAAGG
TGAAGAAGTTTGATGCTACAATGTGCATGCGAGGGCTCAGCCTGAACACCATATCCTTCTATGACTACTCTGAGAGTATTTTTTCTCCATTAAGGAAAAG
CTATGATCTTGACTTAACTGGGTTTTGGCCAGAGCTCCAATCCTCAGCAAATCACAAAAGCAGGTGGTGAGTTCATTATTATTACTGATGATAGGACAAA
GTCAGCAAAAATTTAGAGTAGACAGCTTCTAGACCAATGTGGGACTATTCACCACCTTTGATGGTTGTCAATGAGAGGAAAATTTGAAAACCATGAGCCT
TGGGTTTTACATTATCTGTGCTGATATGAGTGCCTGTGGGATGGTTCTTCATGCTGTTCATGACTAAATGGCAGTCAAGTAAACAGGGAAAATGAGTAGG
AATGGACGAGAAAAGAGAAGAAAGGAGCAGCTTATCACCGTGGTGTCACAAGGAAAGGATGGGTACAAGGTGTACACACATCAAGTTCTACGGAATGTTC
GGGTCATAATTATTTATGTAATAAATAATTCAGTCCTACTTCTGTAGCTTGGTTTGGTGCTTCAAAACAATATGTTTTACACTGCGTCGCTGCGTTAATT
TGAATAAAAATGCAAAATATGTTTTGCATTTTTATTGCTATTGGTTATTTTTGTAATTAACAGCCTTTTCAATTCAATAGATGATGAAGAGCAAGAATGT
TCACAAAATATGTTTATG