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Detailed information on CNT30107025


BLAST search results

BLAST vs Swiss-Prot:
sp|A0A7G2A2Z3|NLTP_MACIN, E-value = 5e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690614Oryza longistaminataOryza sativa40.77103.3690.51369reverse complement
CNT30522978Oryza longistaminataSetaria italica17.944.0286.42162forward
CNT30222192Oryza longistaminataHordeum vulgare9.0627.2492.6882forward
CNT30245643Oryza longistaminataAvena sativa7.9631.1793.0672forward
CNT3099634Oryza longistaminataOryza rufipogon43.8750.5191.18397forward
CNT30115655Oryza longistaminataOryza nivara63.6589.4493.92576forward

Expression of CNT30107025

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MAFGMSFPVHVKRVHMHVQKFSLILSHTVHTADLQNNGRLTQFTWRTSGP*

>peptide 2 (75 aa)
MVRRSGVLLAAASRLWMPPQHALGTVPPACTYGRHGISVLYTAEHEIAARTAAGGATTAATSTATTASVAPLGAMS

>peptide 3 (36 aa)
MENIRTIAIPPYKVHNIAPLSPKRHYSRNCVETYDP*

Sequence

>CNT30107025
TAACTAGATAACCCGTAACAATGATCTAGTGATAAGAGCGTGGTGTTGCTAAATGTGATGGCGTTCGGAATGTCTTTTCCCGTGCATGTGAAGAGGGTTC
ATATGCATGTTCAGAAGTTCAGCTTGATACTATCACACACAGTACATACTGCAGATTTGCAGAACAATGGACGGTTGACACAGTTCACATGGAGAACATC
AGGACCATAGCAATACCACCTTATAAAGTGCACAATATAGCTCCACTATCGCCCAAGCGACACTATAGTAGGAACTGCGTGGAGACATACGATCCCTAAA
CTGCTAAACACCACAGATGGCGAGAGGAAGAAAAAGGGATCGATTTTCGTAAAGCTTAACTAGCTAGCTTAATTTGATGGTACTAATGACATTTTATTCT
CCTCTCGTACGGGAGGCGCGGGCACACACGTACGCATCAGGCCGGCCGCCCTAGTTTATCCTGCACAAAGAAAGAAATTAAATTTGTCTGTAAAAATTTT
CTACTTCGTTTAATGAGAGTATGAGAGTGTTTATGCGTGCACGTACGCGTTGCAGTTGACGCTGGTGCTGATCTTGTAAGGGAGGGAGACGTTGCACTTG
GAGGGGAGCGCGGCGGCGCGGGTGATGTAGGGGCCCCCGGAGGCGCCGTTGGCGACGTTCTTGAGGCAGCCGCAGATGGTGCGGCGGTCGGGGGTGTTGT
TGGCGGCGGCGAGCAGGCTCTGGATGCCGCCGCAGCACGCCCTGGGCACCGTGCCCCCCGCCTGCACGTACGGCAGGCACGGCATCAGCGTGTTGTACAC
CGCCGAGCACGAGATCGCCGCGCGCACCGCCGCCGGCGGCGCCACCACGGCCGCCACCAGCACCGCCACCACCGCCAGCGTCGCGCCCCTGGGAGCCATG
TCAGC