Detailed information on CNT30107014


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002868, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596220Oryza longistaminataOryza meridionalis37.22100.1593.74655forward

Expression of CNT30107014

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MLIINCVPKFVCEPSLILLPLLYPCCLSLLFMRGKLLTLLSIV*

>peptide 2 (44 aa)
MDRIWVVLETASRRPWSVKDRVKKLCRKRLEYDRTSRVGIDPVD*

>peptide 3 (50 aa)
MGIHSPWSGCRNARVTEKPGRGKSHVLGLGSCVGQAAECGIKSVHPLQCE*

>peptide 4 (36 aa)
MQETTRVRPHFSSGYRPCGLRKFSWGRTLVMVVLKW*

>peptide 5 (42 aa)
PVRALRQPTIAGAFRLWGVRERAERRGGRIERKRAVRRRSRE*

>peptide 6 (36 aa)
MFSTGAAWIEYGWFWKRLVADPGQLRTESRSYAGND*

>peptide 7 (34 aa)
MLLPYVTQASLWKFAIRPYPTSCILGMKPKLTQG*

>peptide 8 (34 aa)
MCWWRSLIESDCQKAGGDMSTTRSKNLCENQKSN*

>peptide 9 (35 aa)
RCAPCGSPPSPAPFVSGACVREQREEEEESREREP*

Sequence

>CNT30107014
CCGGTGCGCGCCCTGCGGCAGCCCACCATCGCCGGCGCCTTTCGTCTCTGGGGCGTGCGTGAGAGAGCAGAGAGAAGAGGAGGAAGAATCGAGAGAAAGA
GAGCCGTGAGGAGGAGAAGCCGAGAGTAGTTAAGAGAGAGAAAGAGAGAAAAGAAAGGAGAAAAAGGACCGCGGGACCCACCAGTGGAGCCCACAGTGTT
GACTCCTCACGTGAGTCTATTTTACCTCCCTCTTACACCCCCGGACAGAGCCCACCTTTCAGCTTCTGTATCCACCAAAAGTTCATGTTGCTTCCCTATG
TAACCCAAGCTTCTCTCTGGAAGTTTGCTATACGTCCCTATCCGACCTCCTGTATCCTTGGGATGAAGCCCAAGCTCACCCAAGGATAAGTCCATTGTAC
CTCCTCCAGTCCAGAGGGTACCCATGGGGATATTTCCTTCAAAATAAAAGGAATCCTATTTTGGGTATCCTTCTCCCCTTGATCTATAAATCCTACAAAA
TTTGGGGATTCATATCTTTCCAACCGTGACTCCGATTGATTCCGTTCAACTTTCGGAATTCTTCTAAAATCGAGATCTATCCAATGGCATTACCAGTTTG
AATTGTTTGGTACTTTTATTGAAGAATGTTATTTGGTTTTCTCGTACTAACTGCGTATCGAATATTCCGGTTATTCGTCAAACGTGGATTTCTTGAAGAT
ACCGGTTTCTAAAAGCAAGGCAAGTCACTACGCTCCCTTCCTTGAGCATACTGAACCCAGTTTATAAATGTTTTGTTTATAAATAAAGTTGCATGCTAAT
TATAAATTGCGTACCTAAATTTGTATGTGAACCATCCTTGATATTGTTACCTTTATTATATCCTTGTTGCCTGAGTCTATTATTTATGCGTGGTAAATTA
TTGACATTGCTTAGTATTGTTTAATTATAGACGATTGTACACTCCATAATAGTTGGATTTGGATGTGTTGGTGGCGGTCACTCATCGAGAGTGATTGCCA
GAAGGCGGGTGGAGACATGAGCACCACCCGCAGCAAAAACCTTTGCGAAAACCAAAAATCTAATTAAACAAAATGTTTTCGACTGGGGCGGCATGGATAG
AATATGGGTGGTTCTGGAAACGGCTAGTCGCCGACCCTGGTCAGTTAAGGACCGAGTCAAGAAGCTATGCAGGAAACGACTAGAGTACGACCGCACTTCT
CGAGTGGGTATAGACCCTGTGGACTAAGGAAATTCTCGTGGGGCCGCACCCTTGTCATGGTGGTTCTGAAGTGGTGACGTTGGAGGTGAAGGATCGAGTG
GATCGATCGTTTGGTTAAGGCCCGCAAAACTTAAAACACACCTAACCTATATGTAATATAACCCATTGTGATCCCGGGAGCGCCAGGACTCTCCTCACTG
CCGGCTCGAGGTGGTGTGTTGTGCCGGAAGTGCAATGGGGATCCATAGTCCTTGGAGCGGGTGCCGAAACGCGAGGGTAACTGAAAAACCGGGCCGTGGC
AAGTCTCATGTGTTGGGACTAGGCTCATGTGTTGGGCAAGCCGCGGAGTGCGGGATTAAAAGCGTACATCCACTGCAGTGTGAGTAAATCAAATCTATTC
GAATAGTCGTGCTCGCGGTTATTGAGCACCGGGACTTGTACTACACTTGACTAGCCTCATAGATTTTAATCTTGCTTAGATTAGGAAAGTGGTGTGACCT
TGCCCGATGGGCGGGAAGGTCATGATGATGTTGGAAATGTGGAAAACTGGATGTGAGGGT