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Detailed information on CNT30106957


BLAST search results

BLAST vs Swiss-Prot:
sp|P12940|IBB_HORVU, E-value = 1e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690298Oryza longistaminataOryza sativa91.9758.8294.18550forward

Expression of CNT30106957

Peptides detected in this lncRNA

>peptide 1 (71 aa)
FLIILYVARSSLIYDIETTQRGSCLHCINILFSLLVHTSEQGQTHPHTWSKQTNKACKMHKLQSTENSGWS*

>peptide 2 (30 aa)
MLALHKYFIFPLGPHKRTGTNTPTHMEQTN*

>peptide 3 (34 aa)
MQRQVGGFILLQKALSQHFPHGRGVQKGPGSAPQ*

Sequence

>CNT30106957
TTTCTGATCATTTTATATGTCGCTCGTTCATCTCTTATTTATGATATTGAGACAACTCAACGTGGGTCATGCTTGCATTGCATAAATATTTTATTTTCCC
TCTTGGTCCACACAAGCGAACAGGGACAAACACACCCACACACATGGAGCAAACAAACTAACAAAGCATGCAAGATGCACAAGCTGCAGAGCACTGAAAA
TTCTGGATGGAGCTAGATAGCTGTAGCCTCTAGCTATACCAACTCTGAATGATCGAACGAACGATCAGCTAGCTGCAAGCTAGGGCCGGCGAGTTTTATT
GACGGACACACAGATCGATCATCGATCATCTGTAGCTAGCTAGTTCTCCTCTTGGGGTTTGCACACGGGGCCGGGCTGGCCGGTGAAGTGGTCCTTGCAG
ATGTAGCGAGGCGGCTCCGACGACTCCACGCGCTGGCAATCCTTGCACGCGTCGGCGCACTTGTTCACCTCGTCCATGCAGCGGCAGGTCGGCGGGTTCA
TCTTGTTGCAGAAGGCCTTGTCGCAGCATTTCCCCCATGGCCGCGGCGTGCAGAAGGGGCCCGGGTCGGCGCCCCAGTAGACGTCGCCGCAGATGAGC