Detailed information on CNT30106908


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696520Oryza longistaminataOryza sativa10030.6397.23253forward
CNT30555063Oryza longistaminataOryza glaberrima10037.196.44253forward
CNT30596955Oryza longistaminataOryza meridionalis10035.8995.65253forward
CNT30103734Oryza longistaminataOryza rufipogon10033.6497.23253forward
CNT30577979Oryza longistaminataOryza barthii10031.7496.44253forward
CNT30117704Oryza longistaminataOryza nivara10037.797.23253forward

Expression of CNT30106908

Peptides detected in this lncRNA

>peptide 1 (83 aa)
EMNKRRFSAHSLILVTVLAVLIVLAMPTALLRLSIGRRALGDPHGVQSTAAMQQDAQAVHPACNTNDPNVPSPCPPPVLSPLSP

>peptide 2 (40 aa)
DEQAKVLCTLPYLGDCASSSNCSCYANSFAEAQYREACFG*

>peptide 3 (40 aa)
MEFNPQLPCNKMLRPYILRATQTIRMFHLHAHLQYYHLSRH

Sequence

>CNT30106908
GAGATGAACAAGCGAAGGTTCTCTGCACACTCCCTTATCTTGGTGACTGTGCTAGCAGTTCTAATTGTTCTTGCTATGCCAACAGCTTTGCTGAGGCTCA
GTATAGGGAGGCGTGCTTTGGGTGATCCACATGGAGTTCAATCCACAGCTGCCATGCAACAAGATGCTCAGGCCGTACATCCTGCGTGCAACACAAACGA
TCCGAATGTTCCATCTCCATGCCCACCTCCAGTACTATCACCTCTCTCGCCAT