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Detailed information on CNT30106850


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30101096Oryza longistaminataOryza rufipogon20.534.5993100reverse complement
CNT30116355Oryza longistaminataOryza nivara20.5310.7891100forward

Expression of CNT30106850

Peptides detected in this lncRNA

>peptide 1 (46 aa)
HRQRRRVSDRDRAHAGDGEVVCLVRYVFVCLFHRCDVVAGTVSLQQ*

>peptide 2 (32 aa)
MLIPQMRRGGRHCVLATIIEAVFSWIGSLDFG*

>peptide 3 (29 aa)
MASNKCRQIXXXXHRCEIVVAVYMAAKEV*

Sequence

>CNT30106850
CACCGCCAGCGCCGCCGCGTAAGTGACCGTGACCGCGCGCACGCCGGCGACGGCGAGGTGGTTTGCCTCGTGCGCTACGTGTTTGTATGCTTATTCCACA
GATGCGACGTGGTGGCAGGCACTGTGTCCTTGCAACAATAATTGAGGCTGTGTTTAGTTGGATCGGAAGTTTGGATTTTGGTTGAAATTGAAGATAATGT
GATTGAAAAGTTGTGTGTGTATGACAGGTTGATGTGATGCAAAAGGACTAAAGTTTGGATCTAAACACAGCCTGAGACAAGCTTAATTACTTCGTACTAC
ATTTGTGTTTTTTTTTTTTTGTGTGTGGTTACAAATTGGGCACAATGGCAAGCAACAAATGTCGACAAATTTANNNNNNNNNNCATCGTTGTGAAATAGT
GGTCGCAGTTTATATGGCTGCGAAGGAAGTGTGACAGTGACCGTAAGCAGAGGCAATAAAAGTCAGCGTGCATTTATTATTATTTTC