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Detailed information on CNT30106800


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30540820Oryza longistaminataBrassica napus8.6521.0486.67105forward
CNT30555269Oryza longistaminataOryza glaberrima21.2525.2499.61258forward
CNT30131453Oryza longistaminataLolium perenne7.6624.882.893forward
CNT30218110Oryza longistaminataKalanchoe fedtschenkoi8.3223.4385.15101forward
CNT30350914Oryza longistaminataEragrostis tef8.3222.7583.17101forward
CNT30578077Oryza longistaminataOryza barthii21.2530.4299.61258forward

Expression of CNT30106800

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MLASPWTSAFRCSCKVIYACTHVVILPFHTPRHAPCFVHFLKTPTLLHNQLSSSIILRLHREAYTTPGNK*

>peptide 2 (65 aa)
MELDDQLVLLLGEITSLEVRSQVVDPPQPAAFPAPQQPYTQEGTRASPRFSIGPRDCCCLMEEKV*

>peptide 3 (56 aa)
MVVHPPCFDASFALDERLQMLLQGYICLHACGDTSFPYPQACTMLRTFSEDSNTPT*

>peptide 4 (37 aa)
MRMAGMEAYLLPRSSWSLMISSSSSSVKLPRLRSGLR*

Sequence

>CNT30106800
AGCAATTGCTGTTTTCATTACTCAACAAACTAATTAAGTTCACATAGTTCTTCCTTTATTTGACTTGGGGGGAAATAGAACAAAAGATTTTTATGATGTA
TTGATGTCTCAATCGTAGCATTTTTGTTGGACGTGCCTTGATATGCAGGTTACTATGACCTGGTGTTTGCGCGTCTTGTAGTCCCTGTGGTTTCCTTTTT
CAAGAAGGTACATCAAAATTGAAGGAACGGTAATCAATAGATTTGTCAAAGACCGTGACTTTGGAAAGTTTATGGTACTTGGACGCAGTGGCAAAGCTAT
ATAGTGTTTGGGGGATGCACATGAACCCCCCAAATTCCTAATTTCTCACTTAAAAAGACTAGAATATATAATGTTGTATTGAAATTTTCTAGATTCTCAA
TGGTAGTGCACCCCCCTTGTTTTGATGCTAGCTTCGCCCTGGACGAGCGCCTTCAGATGCTCCTGCAAGGTTATATATGCTTGCACGCATGTGGTGATAC
TTCCTTTCCATACCCCCAGGCATGCACCATGCTTCGTACATTTTCTGAAGACTCCAACACTCCTACATAACCAGCTCAGTTCCTCTATCATCTTACGTCT
GCATAGAGAGGCTTACACAACACCTGGAAACAAATGAGGATGGCCGGCATGGAGGCTTACTTGTTGCCTAGAAGCTCATGGAGCTTGATGATCAGCTCGT
CCTCCTCCTCGGTGAAATTACCTCGCTTGAGGTCCGGTCTCAGGTAGTTGATCCACCGCAGCCGGCAGCTTTTCCCGCACCGCAGCAACCCTACACACAG
GAGGGGACACGAGCTAGCCCAAGGTTTTCAATTGGTCCAAGGGATTGCTGTTGCTTGATGGAAGAAAAAGTCTGAGTTGGAAACAAACTTCAATGGCTCC
ACACCCACTTCCACGTTAGTAGATTTTTTGGGGCACACATCAGCAGCACATGGCGATGCTTAATGGGCTCACCCACCGACATTTTTCTAGCACCCCACGC
TAGCTCCCCCTCCTTTCTGAGATTCTAGAAAACCCAGCAGCATGTCTTTGTGTGTGTGATTGTGCAAGAAAGAAAGCAAAGAAAGGGAAAGGGTGAAGCA
AGAAAGGGGAGAATCTGATCAATTTGGTTAGGGTAGGCCGAGTATTCCATGTACTCATGCTTGCTGCATCGGAATTCACACATCCAGCTGTTGCGCCAAC
AGTATCATCACGAG