Detailed information on CNT30106795


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30452352Oryza longistaminataSaccharum spontaneum18.4423.6187.8123reverse complement
CNT30371424Oryza longistaminataOryza glumipatula20.8419.6685.61139reverse complement
CNT30104679Oryza longistaminataOryza rufipogon68.8277.9397.39459reverse complement
CNT30578596Oryza longistaminataOryza barthii94.663.5496.83631reverse complement

Expression of CNT30106795

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MHVNGDGSYWKDCLFCMDVCRTATKAFQSIFSYYPAVKT*

>peptide 2 (70 aa)
PGQRFSDGAACRGPPEYFKGRCPLTRTTPGDVEPVPQSCRSPGELKVVFCQPSMVAAAVPELIRTVVANI*

>peptide 3 (95 aa)
AGAAVLRRRRLPRPAGVLQGPVPADEDDAGRRRARAAELPLPRRAQGRLLPAVHGRRRRAGAHPHRRRQHLAVCEVLVVHTWRVLRAPRVRASCV*

>peptide 4 (32 aa)
MCTPYVDCTRTDGHSLVLVLYVYNLRRILFFM*

>peptide 5 (31 aa)
MEVIGKIVCFVWMSAGQQPKRSSLFSLIILQ*

Sequence

>CNT30106795
GCCGGGGCAGCGGTTCTCCGACGGCGCCGCCTGCCGCGGCCCGCCGGAGTACTTCAAGGGCCGGTGCCCGCTGACGAGGACGACGCCGGGCGACGTCGAG
CCCGTGCCGCAGAGCTGCCGCTCCCCCGGCGAGCTCAAGGTCGTCTTCTGCCAGCCGTCCATGGTCGCCGCCGCCGTGCCGGAGCTCATCCGCACCGTCG
TCGCCAACATCTAGCTGTGTGTGAGGTCCTCGTCGTGCACACGTGGCGCGTCCTGCGTGCGCCACGTGTACGGGCTAGCTGTGTGTAGAAGTGGGTAGGG
GGAATAATAATGACAGTGCGTATACACGTATGTGTACACCGTATGTCGACTGTACGCGTACGGACGGGCACAGTCTGGTATTAGTGTTGTACGTGTACAA
TCTACGACGTATTTTGTTTTTTATGTAAGAAAAAAAATGCTTTGATGTGTTTTTATTGCCACGTACTATATATGTCTGTTTGACGCGAACCGACGATGTA
GCAACAACAGTAGATATGCACGTGAACGGGGATGGAAGTTATTGGAAAGATTGTTTGTTTTGTATGGATGTCTGCAGGACAGCAACCAAAGCGTTCCAGT
CTATTTTCTCTTATTATCCTGCAGTAAAAACGTAGTTGTTCTCTTTCCATCATTTTCTTCTACTCCC