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Detailed information on CNT30106724


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONPOPT000178, E-value = 1e-165

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671914Oryza longistaminataSetaria viridis99.2153.0496.94882forward
CNT30378673Oryza longistaminataArabidopsis thaliana41.1729.3594.54366reverse complement
CNT30156864Oryza longistaminataPistacia vera39.9324.1395.49355reverse complement
CNT30223394Oryza longistaminataHordeum vulgare70.4254.2997.76626forward
CNT30234026Oryza longistaminataBrassica oleracea42.1894.4694.4375reverse complement
CNT30555551Oryza longistaminataOryza glaberrima38.2532.6399.41340reverse complement
CNT30605073Oryza longistaminataGossypium raimondii23.0613.4985.85205reverse complement
CNT30721163Oryza longistaminataTriticum spelta74.1363.9299.09659forward
CNT30346086Oryza longistaminataEragrostis tef19.4622.8298.84173forward
CNT30362056Oryza longistaminataSorghum bicolor44.7796.694.72398reverse complement
CNT30595568Oryza longistaminataOryza meridionalis13.0529.999.14116reverse complement
CNT30429739Oryza longistaminataPapaver somniferum43.3111.9792.47385forward
CNT30118490Oryza longistaminataCitrus clementina10.4620.9993.5593forward
CNT30103741Oryza longistaminataOryza rufipogon32.454.7597.57288reverse complement

Expression of CNT30106724

Peptides detected in this lncRNA

>peptide 1 (53 aa)
EXXXXTRRWAWKQPSFEESVIAHWSSSMAPKMSQGSSDSPKRRDLESCFFKCQ*

>peptide 2 (88 aa)
MSAKAVALPYTRIRFLAPSRVSTITRSRFLAGADTDFSLKAKTQKWANTRPSGRTCRLRLRAPADTFRSTFTCEPKSSCRTPSFLISVL

>peptide 3 (45 aa)
MSNEKSCEKHDRLPVEGFLRSVNLRRVNRSLRNPRKGCRPMGTRK*

Sequence

>CNT30106724
GAANNNNNNNNNNCAACCAGGAGGTGGGCTTGGAAGCAGCCATCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAGCTCCATGGCACCGAAAATGTCTC
AGGGCTCAAGTGATTCACCGAAGCGACGAGACCTTGAAAGCTGCTTTTTCAAGTGTCAGTAGCGGGACGTTCTGTCAATCGGGGAAGGTTTTTGGTGACA
AGACCTGGAGATATCAGAAGTGAGAATGCTGACATGAGTAACGAGAAATCCTGTGAAAAACACGATCGCCTGCCAGTGGAAGGCTTTCTGCGTTCAGTCA
ATCTACGCAGAGTGAATCGGTCCCTAAGGAACCCCCGAAAGGGCTGCCGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACTGAACCATGCC
TGGATCGTCGGAGCGAATTGGATGATCGGGCCGAGGGCTGCCCCCTCTTCCCCTCGCTCTCCTTTCCTTAATATTCACCGTCGAGTCATCAAAGCCGTCA
ACTAATTCAGAGGGGCTCGGCTGGCCCGGTCGCCCTACGCTACTGGCGCTTCCAAAGGCGAAGCTCTCGTCTTTGGCGACCAGCAAACTCTGGGCTAAAA
CCTGTAGTTTTGAAGCAAGGGATGAGCGCGAAAGCCGTTGCGCTTCCGTACACGCGCATACGTTTTCTTGCTCCGTCGCGCGTTAGTACAATAACGCGCA
GCCGTTTTCTTGCTGGGGCGGACACGGATTTCTCTCTAAAGGCGAAGACTCAGAAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGCTCCGGCT
CCGCGCACCTGCTGACACCTTTCGAAGCACTTTCACGTGTGAACCGAAGTCGTCTTGCCGAACTCCTTCCTTTCTCATTTCAGTCCTCG