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Detailed information on CNT30106627


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT000139, E-value = 8e-74

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692288Oryza longistaminataOryza sativa10041.09100203forward
CNT30522081Oryza longistaminataSetaria italica98.0334.3793.97199forward
CNT30289434Oryza longistaminataTriticum aestivum98.0334.3791.96199forward
CNT30221546Oryza longistaminataHordeum vulgare95.0784.6591.71193forward
CNT30392320Oryza longistaminataTriticum turgidum96.0697.591.79195forward
CNT30439818Oryza longistaminataAegilops tauschii96.0665.2291.28195forward
CNT30248579Oryza longistaminataAvena sativa98.0334.0291.96199forward
CNT30447838Oryza longistaminataSaccharum spontaneum98.0389.2495.48199forward
CNT30681546Oryza longistaminataTriticum urartu95.0788.1391.19193forward
CNT30721558Oryza longistaminataTriticum spelta96.0687.0591.79195forward
CNT30369862Oryza longistaminataOryza glumipatula10092.27100203forward
CNT30148227Oryza longistaminataBrachypodium distachyon82.7666.6788.1168forward
CNT30575680Oryza longistaminataOryza barthii10081.53100203forward
CNT30116256Oryza longistaminataOryza nivara10089.4399.51203forward
CNT30604388Oryza longistaminataOryza punctata65.0239.7691.67132forward

Expression of CNT30106627

Peptides detected in this lncRNA

>peptide 1 (66 aa)
RWLSPSHHFQSATVVPSRTPPWSLSPWRASKLRRMLFSMRMQRKLLPTSPLSVHSTDSSGYSGLNGA

>peptide 2 (31 aa)
AGCRPRTTSRARRWCRRGRRRGPCRRGGRRS*

>peptide 3 (66 aa)
ALVVALAPLPERDGGAVADAAVVLVAVEGVEVEADVVQHADAAEALAHVAALRPQHRLVRVLRVERR

Sequence

>CNT30106627
GCGCTGGTTGTCGCCCTCGCACCACTTCCAGAGCGCGACGGTGGTGCCGTCGCGGACGCCGCCGTGGTCCTTGTCGCCGTGGAGGGCGTCGAAGTTGAGG
CGGATGTTGTTCAGCATGCGGATGCAGCGGAAGCTCTTGCCCACGTCGCCGCTCTCCGTCCACAGCACCGACTCGTCCGGGTACTCCGGGTTGAACGGCG
CCA