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Detailed information on CNT30106623


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002489, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697308Oryza longistaminataOryza sativa74.4943.991.47809forward
CNT30552239Oryza longistaminataOryza glaberrima75.649.5891.11821forward
CNT3099966Oryza longistaminataOryza rufipogon75.658.1490.86821forward
CNT30574625Oryza longistaminataOryza barthii75.3279.1991.08818forward
CNT30118029Oryza longistaminataOryza nivara75.1470.192.52816forward

Expression of CNT30106623

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MLHIHISLHVHDVIHVSFFRKFLFTLFKYHA*

>peptide 2 (73 aa)
MDKLCYFVWFHSPNYYSKLPIISCVVLVLCYIFIFHFMFTMLFMFHSSGSFCLHYSSTMRSHGSAIRIFIHDP*

Sequence

>CNT30106623
GTGCAAAATAGACTATAGACTGTAAGTTTGTAATCGGAGTCTGAACGAAAGCCCGGTGATCAAATTAATATGGGTCATTCGATCTTGATTAGGCTCTCGG
CTCTTTATTTAACCAACTGAAAAAAAAGAAGAAAAAGAAAAAAAAGGGACGCCAGCAGCTAGCCCTAGCCCTAGCCCGTCGCCCCCAACCCTGCCTCTGC
GCCGCCGCTGCTGGTGACGGCGTCGCCACAGTCGTCGTCGTCCGCCGCCGCCAATCGATTTCCCCCTGCTCGGCTGCGTCTTGATATGGAGGGTTCCAAC
GTTGGAGGAGTTGAGTCGGATTATCGAAGGAGGTAAGGCAAGTACAAGATGGACTAGTGTGATGGATAAACTGTGTTACTTTGTTTGGTTTCATTCACCC
AATTATTATTCAAAGCTTCCTATTATCAGTTGTGTAGTTTTGGTATTATGCTACATATTCATATTTCACTTCATGTTCACGATGTTATTCATGTTTCATT
CTTCCGGAAGTTTTTGTTTACATTATTCAAGTACCATGCGTAGTCATGGGAGTGCAATTCGGATCTTTATTCATGATCCTTGAGAAGCGCTGATCACGCT
TGCTTGGCTTGCTAAGAGGATATTCACACCTGCCTGGGAGGGAACTACTATTTTGTCTCCTTCGTTTTAAATTAAAGGAAATCAAATGTTTCATATTGGT
TTTCTTATTGCATTAAACCTATGTATGTTTTACTAGTTCAATATTGTACTTGCTGAGTATTCTTTACTCACTCTTGTGTTTAATTTGGTTTTTAGGTACC
TAATGATATTGATCGGCATGGGACGGGAGTAGCACCCTTGAACTACACATTATTATTGCACACTATTGAAATTTAGTTTTAGACTATGTTTCTGCTTAGC
ATAAGTTTTGCGTAGAACTTGTAATAGTCATTTAAGGTTCTGGTCTTTATTTTCACGTGGAATTTGTGGAGCTAGGATGGTTGGATTGCGTGGATTATAT
TGTTATTGAGTTATCTTATAACTGTTTATTGTGGATGTCCGTATTTTTAGGGGAGACTCTGCCGAAATTTCTAATAAATTTTGGAG