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Detailed information on CNT30106548


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001336, E-value = 1e-100

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694231Oryza longistaminataOryza sativa39.0210099.62263forward
CNT30101974Oryza longistaminataOryza rufipogon64.0974.3599.31432forward

Expression of CNT30106548

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MMDLYIKLSVCVPRLISGRGFYAQISSEITSEFPGVTNYNRLNMTMRPTDAWSTLRLVCFGHVTSVNFELFGRVILF*

Sequence

>CNT30106548
GAAGGAGAAGACGTTTGGCTTATACCCCAGTTGAGCTGCCTGTGGGAGTGGAGCCGGAGCTTCGCTAGACCGTAATTCCGCTGCTGTTTTCTTTTCTTTT
GTAGGTATGTAACGTTATTATTATGATGGATTTGTATATTAAATTGTCAGTTTGTGTACCTCGGCTGATTTCTGGACGAGGGTTTTATGCACAAATAAGT
TCGGAAATTACTAGTGAATTTCCGGGCGTGACAAATTACAACCGCTTGAACATGACGATGAGACCCACAGATGCCTGGTCTACATTGAGGTTGGTATGCT
TTGGACATGTGACTTCAGTGAATTTTGAACTATTTGGACGTGTTATCTTATTTTGATAAGTTAATTGTGGTTGGACTCAGTGTGGACTTGGTCAGTGATG
TACGATCTTATGTTTCTATCTAGGATTTGGTCGAACTGCTGTAACTGAACCTAGTTTGCTTTTTTGGCTAGATTTGGTGAAGATGTATGCATTGAACTTA
TTTATTTTGCTATGGTCAATGTACTGATGTATATGAATATGACCATATTGTGATCTATGAGTGAACCTGTGTGGTGATAGCATGTGCTATATTGGATGTT
AAGTGGGCTTGTGAAGTTGTGATGTATTGATTGTTAACCGGGCAATCATTTGAGATACATGGGTTTGTTATATG