Detailed information on CNT30106373


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003123, E-value = 6e-165

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691393Oryza longistaminataOryza sativa30.7297.5697.78360forward
CNT30225098Oryza longistaminataHordeum vulgare5.824.4691.1868forward
CNT30460356Oryza longistaminataSaccharum spontaneum10.1524.8484.87119forward
CNT30603733Oryza longistaminataOryza punctata41.6492.0890.57488forward

Expression of CNT30106373

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MLFLLLRLLLQHPGFPLLFLMLPLVNLAETSWVLTMSESEVSVIYFGLYKLVNS*

>peptide 2 (43 aa)
MDDFGRNFVHYQVLKHRFVFQPFAVSLKCCIWYENLLSFPDDS*

>peptide 3 (40 aa)
MDPPPAQAMNTDDFTDKTMDECCSCCYDCCSSILDFLCCS*

>peptide 4 (38 aa)
MNVVLAATIAAPASWISSAVLDAAPRQPCRNFMGADDE*

>peptide 5 (50 aa)
ANCSTRHLKASNHRAVTPDHVLTIAPPVSAQEAGCGKEDEDHGMRNQRNS*

Sequence

>CNT30106373
AGCTAATTGCTCCACTAGACATTTGAAAGCAAGCAATCATAGGGCCGTTACACCTGATCACGTTCTTACTATCGCACCCCCCGTTTCGGCTCAAGAAGCA
GGATGTGGAAAAGAAGATGAGGATCATGGCATGCGCAATCAGCGGAATTCCTGACACCAAATAGGCCGGTGCAAACTGCAAAACTCCAAACCACTACCCA
TTTTAAGAACCCACTAGACAGAACCCGGAAAAGCTAATTCATCAGTCGACAGGGCAAACCTTAAATCCTGACAAAAATCTTTTCTTTATACCACCACCCC
ATCCCATGTGCTCCACACTTATCTGCATTTCCGTCCAGCCTATTTAGCCCTTCGCTAAGCTTGCTTACTCTAGTGTACTTCCTAGCCTTTATACTAGCCT
TCTGCCTTCTTCCTCATCTCACATCTGTCTTTTCTTGGACTTCTTGGCGATGGATCCCCCACCGGCTCAGGCGATGAACACCGACGACTTCACGGACAAG
ACCATGGATGAATGTTGTTCTTGCTGCTACGATTGCTGCTCCAGCATCCTGGATTTCCTCTGCTGTTCTTGATGCTGCCCCTCGTCAACCTTGCAGAAAC
TTCATGGGTGCTGACGATGAGTGAATCAGAAGTCTCGGTGATATATTTTGGACTGTACAAGTTAGTGAATTCTTAGATTAGTTCTTCCAACCTTGCGTTG
TAACTGCGATTTGTGCTTCACTTTATGGATGATTTTGGGAGGAATTTTGTGCACTATCAAGTTCTGAAACATCGATTTGTCTTCCAGCCTTTTGCGGTAT
CCCTGAAGTGTTGTATATGGTATGAAAATCTCTTGAGTTTCCCTGATGATAGTTGATGCTTCGTGCCATCAGCAAAGTGTAACTTGAGCCAAGAAAATTC
ATGCACGACGATGGTGTTTGAGGCTAGTTGATGGTGTATGATTGAATGTTGAATCGGAGCATCATGGGCTAGCCTTTTTTTTGAGTGGCGTTCTCTCTTT
CGCTCATCATGAGATGACATCGTGACAACTGACTGACTGGCTGGCTGACAGCCTGACCTGAAGAGAGCCCCACTTTTCTGTCCATTGTTAGCGATGATGT
CAACAGGTCTTTTGTACTGTACTGATGACTAAGGGCTTATTCGGAATACAGGAAAAACGTAGAAAAATTTCC