Detailed information on CNT30106312


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002054, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691212Oryza longistaminataOryza sativa20.8784.4294.88645reverse complement
CNT30552476Oryza longistaminataOryza glaberrima11.1349.2897.38344forward
CNT3012019Oryza longistaminataZea mays1.6223.369050reverse complement
CNT30104024Oryza longistaminataOryza rufipogon24.7210093.46764reverse complement
CNT30574676Oryza longistaminataOryza barthii22.2367.8286.61687forward
CNT30117298Oryza longistaminataOryza nivara3.4648.289.72107reverse complement
CNT30604043Oryza longistaminataOryza punctata30.1981.1388933forward

Expression of CNT30106312

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MATLYRLWKCLVVKASKSPDVAVLHGLGDPG*

>peptide 2 (38 aa)
MSHRHGNLAKPHSIPSHPMRFHRSHKSSRPARSWHGRA*

>peptide 3 (48 aa)
MIHVCHRGYQRYVLGLVLRSRFRRTRFTPFSYDTLLSGAVVRRCQIRV*

>peptide 4 (49 aa)
MSFKNETRDTRAFLGGILVQSHLRTDSFGITSEHTTVRPHGCNGTPLAE*

>peptide 5 (42 aa)
MVELERGDVGPKVLLQEPVELVDDESLRPVARPPPHPQHRPPD

>peptide 6 (42 aa)
MLGKHLALRGTARPGVPGSDWSFGDHCYREVWKIGLVWENHI*

>peptide 7 (52 aa)
MMPRDMWIQRGGVGENPRASWHSMVWDLTCCWSGTPLVGIWQPCIGFGNALS*

>peptide 8 (51 aa)
LSPLSLSPARPWAISLQPPMNRSLCFLPPPNHLSYTKVHISSPPFAGPTCQ*

>peptide 9 (64 aa)
MSVDVNNILENIISINSINHFPYSRKFRQIISLSRKIHLNFQNSYPSIRSSDCLRSTSSNSIKL*

>peptide 10 (57 aa)
PISSFTLSRQAMGHFLAATHEPKSMFPPSTKSLILHKSPYILPTVCWPHVSMSQRYS*

Sequence

>CNT30106312
CCTATCTCCTCTTTCACTCTCTCCCGCCAGGCCATGGGCCATTTCCTTGCAGCCACCCATGAACCGAAGTCTATGTTTCCTCCCTCCACCAAATCACTTA
TCTTACACAAAAGTCCATATATCCTCCCCACCGTTTGCTGGCCCCACGTGTCAATGAGTCAAAGATATTCTTGAGAATGTCTTTTCCAATACTCCACACA
TATTTCTCTTTTCTAGAAATTCAATAAATCATTTCCTATATTCCAAATTCCATAAACCCATCCTCTTAATCCGGAGATTCCAATAATTCGTCCCCTCGAG
CCCGCATGTCAGTGGATGTCAATAATATTCTTGAGAATATTATTTCTATAAATTCCATAAACCATTTCCCGTATTCTAGAAAATTCCGACAAATCATCTC
CTTGTCCAGAAAAATTCATTTAAACTTCCAAAATTCATATCCCTCGATCCGTTCGTCTGATTGCCTCCGTTCCACTTCCAGTAATTCCATTAAATTGTGA
TCTATCTAATGGCACTATTAATTATCCTAAATAGGATATTTTATTTGGTCTTTTTTTAGGTTTTTGGTTGTTTGCGCCTAGTTGCGGTTACCGGATATTT
TTCTTCAAGCGGAATTCTCGAAGATTTGTGAAGCTTCGTGAAGACCCTGAGCAAGGCAAGCCACCTTTGAACATATTGAGCCTATATTTGAACTTAATTA
TATTGCTTGCAAAATATTATGCATTGATAGGATTGCACTTAATCTGTTTGCCCCGTCTGCAAGGCAGACCGGTGGGCCTACCTAACTTGTTGCATCTGAT
CCTTCTATTGTTAATTGTTATATCATGTTCCCTTGTAACCATCTAGTTGCGCCTCAATAATTTGTGCACTCTGTGCGAGTATTGACGGTCGCCTTCAAAC
TTAAAATTTGAGTAACTTCTTGGGTAAAACTTGGTTTACAAAAGCTTTGGAAAACCTGATGCCTGGGTCGGTGCCTTGTGAAAGAAAATGAGTTTTAAAA
ATGAAACTCGCGACACAAGGGCATTCCTGGGTGGAATACTTGTGCAGTCGCATTTAAGGACCGATTCCTTCGGAATTACATCCGAGCATACAACAGTGCG
ACCACATGGGTGTAATGGGACGCCCCTGGCTGAGTAATTAGCTAATCAGGGGAACCATGATGCCAAGAGACATGTGGATTCAACGGGGTGGTGTCGGGGA
GAACCCTCGGGCTTCCTGGCACAGTATGGTCTGGGACCTAACTTGTTGTTGGTCTGGGACCCCTCTCGTTGGCATATGGCAACCCTGTATCGGCTTTGGA
AATGCCTTGTCGTGAAAGCCTCAAAGTCGCCAGACGTGGCTGTTCTGCACGGGCTGGGTGACCCAGGTTAGTAACGTCGTGTGGGTAAAGTGTACCCCCT
CTGCAGAGGTTATTAAACTGTTCGAACAGCCGTGCCCACAGTCATGGGCGGATGTGAGGTGATTCCTTAGCATAGTTTTTGTTTTACCCTGTTTTATGAA
AATGTGTTAAGGTTTGGGAAACCTAATGCTTGGGAAGCATTTAGCTCTCCGGGGGACAGCGAGACCGGGAGTCCCTGGAAGTGATTGGTCGTTTGGGGAC
CACTGTTATCGGGAAGTTTGGAAAATTGGTTTGGTTTGGGAAAACCATATTTGAAGCCAACTCTGGGAGTTGTGCAAATCTTGATAAATAAATTTGTTAC
TTCTCACCTCCCGACCGAGCTGAGACTTGTCTCGCTCTGGTTGTGGAAAGCACACACTTAGATGGTTGAAAACTTGAAAACAAAACTGTTTGCAAAATAA
CAGCCTTCCCTGAAGCTTGCATTAACCACCTAAGTTCCCCTGGCTTGCTGAGTACGTAAGTACTCACCCTTGCTCTCTATATAAATATAGTTCTGCCAGC
TCCGAAGATGAAGTTGAAGTGAAGTGAAGATTAGGGTTTCGTCCTAGTTCTCTGCCGTTGCCTGTGGCGTTGGGTGTTAGTCCGTTGGTTGGTTCCGCTG
CTGCTGCTGTTGTTGGTGTTTGCCTCCTCCGTGTCGTTGGTTGCATTCTCGGGCTGTCTGAGCTGCAACCTAAGTTAAGGTAAATAAGTCATCTATTAAT
TATAAGGATTTGCAATGATTCATGTTTGTCACCGTGGGTACCAGCGCTATGTCCTGGGACTGGTACTGAGATCGCGGTTTCGTAGGACGCGGTTCACACC
GTTTTCCTACGACACGCTCCTGTCAGGTGCCGTTGTACGGCGGTGCCAGATTAGGGTGTGACACACGATCGCAGCACCTGAACGCCTTGCGGTGATTCTA
GAGTCGCCAACCACCTCAATCTAGCAAAAGCTAAACCAAGATGGGTTTTGATAGCTAAACCGTCTAGCGGAGCCGATTCTATATAACTACCCGTCTCGTG
GCAAAATAGAAGGTTTCCAGGACAAACCTAAAAAGAGGTGTCGCACTCTCGCAGCGGCGGCGGACGATTTACGGCGCAAATCAACAAAGATGGACAAACT
AAGAAAAAATTAAAAGCAATATGAAAAGAACGATTCGATTGACTGATAGATGATTGAGATTACAATTGAACCGGCCATGTCCCTTAAATAGGGGTTGGTC
TTGCCCTTTACAGGCCCTCATCCACGTCCAATTCGGGATAGAATCCATAGGAAACCCGAAACCTATCTTCCCGAGCAAGGAAACCCGAGGTCCGACAAAA
ACAGACCCGGACTCGGACTCTGCCGGTCTGACCGGCCTATACACGGCGGTCAAACCAGCCCAATCAGAGAAAAACCGGCAGACTTCCAAACTTTGGGTAT
TGGCTTTCTGTCAGGAGACAGCCACCCACTGCCCAAAAAATGGAGCTCTGAGCCACTGATGTCTCACAGGCATGGCAACCTGGCCAAACCCCATTCCATC
CCATCCCATCCCATGAGGTTTCACAGATCTCATAAATCATCCCGACCTGCAAGGTCTTGGCATGGTCGAGCTTGAGCGTGGAGACGTTGGACCTAAAGTT
CTTCTGCAAGAACCTGTAGAGCTCGTTGATGACGAATCGCTTCGGCCAGTTGCGCGCCCTCCTCCGCATCCTCAGCACCGTCCTCCCGAT