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Detailed information on CNT30106216


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552695Oryza longistaminataOryza glaberrima50.8524.4696.65239forward
CNT30596393Oryza longistaminataOryza meridionalis77.6642.4998.63365forward
CNT30100318Oryza longistaminataOryza rufipogon45.3257.2696.71213forward
CNT30576798Oryza longistaminataOryza barthii77.6636.5797.81365forward

Expression of CNT30106216

Peptides detected in this lncRNA

>peptide 1 (65 aa)
PGNKSSSPEVWKKTSRGGGGGSGARRDPTATATATSSGRHLLSVTEGYSSSFGAITDVVFYVIKM*

>peptide 2 (61 aa)
PGINHLVPRCGKKPREEAAAGAARGATRRRQRRRPHPAATFSPSQKAIVRHLEQSLMLYFM*

Sequence

>CNT30106216
GCCCGGGAATAAATCATCTAGTCCCGAGGTGTGGAAAAAAACCTCGAGAGGAGGCGGCGGCGGGAGCGGCGCGCGGCGCGACCCGACGGCGACAGCGACG
GCGACCTCATCCGGCCGCCACCTTCTCTCCGTCACAGAAGGCTATAGTTCGTCATTTGGAGCAATCACTGATGTTGTATTTTATGTGATTAAAATGTGAT
GGTAGCAGATTCATGAAGTACTTAAACTCTCATTTTGGGATATCCTAGGAGAAGTTTGGGTTTTGTTGTGTATTTAGACTTCGCTAGTGCAACCTGTTTT
GAGTTTGCTATGTGAGATACTTGGAAAGTGAAAAGAATTGTATTATTACCTTTTGTCTGCTGACAAGACATGTTTGCGATGTGCTTCTTGCTTGAAGAAA
CAGACGCATAGTACACTGTTATCTTCACTGTTAGCAGTATTTTTCATGACATCAACAACTTATGTGTACG