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Detailed information on CNT30106100


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692464Oryza longistaminataOryza sativa40.7623.2699.07214forward
CNT30100789Oryza longistaminataOryza rufipogon25.5226.4395.52134forward
CNT30116188Oryza longistaminataOryza nivara53.7113.7197.16282forward

Expression of CNT30106100

Peptides detected in this lncRNA

>peptide 1 (96 aa)
MNNVVTDSQETGDPLSSQAQRKLSFCWKLRSHMLLLCPTLTDILIANGRRIITKPQMQTAHARCKCDSRSFGKGIRRGKGADMTTNALAIRVYIST*

Sequence

>CNT30106100
AAATGAAATGATAAAACCTGCAGGATGTTCAGTACCAATCAGTTGCTGCTGCTATTATAGAGACTGACACACATGTCACAAGATCGTCATGCTCTTCAGG
GAAAAAAAAAGAAGTGATGAAGCTGCTGCTCAGTACACTTTTATGTGAGCTATCTAATGAATAATGTGGTCACAGATTCACAAGAAACCGGTGATCCCTT
GTCTTCTCAAGCGCAACGGAAATTGAGCTTCTGTTGGAAACTACGCTCCCACATGCTCCTGCTTTGCCCTACTCTGACTGACATTTTGATTGCCAACGGC
CGCCGGATCATCACAAAGCCACAGATGCAGACTGCTCATGCAAGATGCAAGTGTGACTCGAGGTCTTTTGGTAAAGGCATAAGACGAGGAAAAGGTGCTG
ATATGACAACTAATGCGCTAGCTATTCGTGTATATATTAGTACATAATTTAAAATATGCAGAAAATGCACAAAGCTAGAACAAAACAGCTAGCATCCCAA
CAGCATATGAATTGCTAACTTTCTG