« Back to Oryza longistaminata search


Detailed information on CNT30106043


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552286Oryza longistaminataOryza glaberrima81.1342.1797.92288forward
CNT3066724Oryza longistaminataLeersia perrieri36.6244.5286.15130reverse complement
CNT30595465Oryza longistaminataOryza meridionalis81.1348.3296.18288forward
CNT30369297Oryza longistaminataOryza glumipatula81.1346.0197.92288forward
CNT3099917Oryza longistaminataOryza rufipogon81.1342.1797.57288forward
CNT30574627Oryza longistaminataOryza barthii81.1349.3297.92288forward
CNT30115788Oryza longistaminataOryza nivara81.1344.8697.22288forward

Expression of CNT30106043

Peptides detected in this lncRNA

>peptide 1 (39 aa)
VGETGHCGYKHRRTSKYNRQRTEADEVSTGEIWILQREW*

>peptide 2 (50 aa)
MDPAERVVKAVWYKGAVVTHRPKPVSPIVNQSKNKNKQAKKPKPAAPSKK*

Sequence

>CNT30106043
CAGTAGGAGAAACAGGCCATTGTGGATACAAGCACAGAAGAACAAGTAAATATAATCGACAGAGAACTGAAGCCGACGAGGTCTCGACAGGCGAAATATG
GATCCTGCAGAGAGAGTGGTGAAGGCGGTATGGTACAAGGGCGCGGTCGTCACTCATAGGCCGAAGCCTGTTTCGCCTATCGTTAACCAGAGCAAGAACA
AGAACAAGCAAGCCAAGAAGCCCAAACCAGCTGCACCCAGCAAGAAGTGATAAACTTAACTGGCTGCCTGCCTCTACTACACAGGCACGGAGAGGCTGAT
TCTGATCCGTGGGAAGAAGCAGAACCCAACAATTTGATTTGGTGAGTACACCCAA