Detailed information on CNT30106030


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003830, E-value = 2e-135

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692122Oryza longistaminataOryza sativa98.6497.3293.3582forward
CNT30596372Oryza longistaminataOryza meridionalis38.9818.484.78230forward
CNT30369939Oryza longistaminataOryza glumipatula94.2498.0693.71556forward
CNT30100598Oryza longistaminataOryza rufipogon98.6494.3393.47582forward
CNT30116169Oryza longistaminataOryza nivara96.197.7693.83567forward

Expression of CNT30106030

Peptides detected in this lncRNA

>peptide 1 (41 aa)
TAAASLPPQLVAGRRLYFHLRRPPRELRLGAVGAHLAVEGF*

>peptide 2 (58 aa)
DGRRLAPTPTRRRPSPLLPPAPSTARAEAGRRRGAPRRRGVLTSEAVWIFDLPLSTPT*

Sequence

>CNT30106030
CGACGGCCGCCGCCTCGCTCCCACCCCAACTCGTCGCCGGCCGTCGCCTCTACTTCCACCTGCGCCGTCCACCGCGCGAGCTGAGGCTGGGCGCCGTAGG
GGCGCACCTCGCCGTCGAGGGGTTCTGACTTCTGAGGCCGTCTGGATCTTCGATCTGCCCTTGTCGACCCCAACATGATCGATCTCCACCTGTTCTCCTC
TCTAGTCACCACCCTCCCTTGGACTTAGATGAAGCTAGTTGGTGACAAAGCATTCCTCATTCCTTGAGCAAGAAGTGAATGGAAGTGATGCGTACTTAAA
ATGACATCATAAGAGAATCAATGGTGAGACAATGAGAACGGTGCATCTGAAGACAATACCTGCGAATGATGATGGGATCGAATGACAAAGGAATTGTCCA
CTGCACCTCCAATCACATATTTATAGATTGAGTGTTATAATTTTGATAGACACCAAGATGTTAGTTCTGTTTGAAATACTTAGTTATTTAGTTGGATGTT
CCGAACAAATTATTATTATGTATTTCAATTGAATAAATTTGGTTGGTTGTGTCAGAATATATGGTGATAAGCATGCATGTTAATTCCTAG