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Detailed information on CNT30105946


BLAST search results

BLAST vs Swiss-Prot:
sp|Q32SG5|RIK_MAIZE, E-value = 7e-14

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692367Oryza longistaminataOryza sativa40.9699.8798.73786forward
CNT30369844Oryza longistaminataOryza glumipatula33.499.3898.91641forward
CNT30100816Oryza longistaminataOryza rufipogon59.1599.9198.681135forward
CNT30575866Oryza longistaminataOryza barthii98.8100.1198.841896forward
CNT30603883Oryza longistaminataOryza punctata17.7296.3291.18340forward

Expression of CNT30105946

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MPSEHQLYIAIEINFTGFYGINLLRKPCTYDIRSVD*

>peptide 2 (54 aa)
MVSICFENHVHMILDQWTKDGAWQSVGDGTLRMVWRERQEGHLRQHCREERGST*

>peptide 3 (30 aa)
MWLHMQYITRTKKTFAYSAAQVPSLKTLPY*

>peptide 4 (62 aa)
MSLSENSLTCKTLMVEPISPTEKEGKNLTKLYLNLLRNYQFSNLRNGKNVVLYEVFLWASTA*

>peptide 5 (95 aa)
ETDAPPGLTTLGSFEGNCAEYKFGGETELTSKDLGGAIGLFKSERLSSFLDISFEGNLGGGGGMLLGGGGGMFLGGGGGGGSMFLDADGCAETCG*

Sequence

>CNT30105946
AGAAACAGATGCCCCACCAGGTTTGACCACTCTAGGCTCCTTTGAAGGTAATTGTGCTGAATACAAATTTGGTGGTGAGACTGAACTCACGTCCAAGGAT
CTCGGAGGTGCCATTGGCTTGTTTAAATCTGAACGCCTATCCTCATTTCTTGACATCTCATTTGAAGGAAACTTAGGCGGTGGCGGAGGCATGCTCTTGG
GAGGTGGGGGTGGCATGTTCCTGGGTGGTGGTGGTGGCGGCGGCAGCATGTTCTTGGATGCAGATGGATGTGCAGAAACATGCGGTTGATCTTGAAGAAG
CATCCCATTTGATCCAGGCTGAACTTTAATTGGAGGTTTAATCGATGAATTGGTCAAGTTACCTAAACCGTCTAAACCTGTCTTAACAAATTTGGACCTC
TGTTGTGAGTTCTGGAAAAATGAAACAAAAAGACTTCTCCATCAAATTCCTTTGCATTAGAGTAAATAGTACACAATGAAATACAAATAAAGGATGAAAT
CAACAAAATTTGTGCATAAACAGCACAAATCCATAAATCGAAAGCATTATGACTGGTAAGCATCATACATGGATATCAGTTAACCATGCAGAATTATAGA
GATTAACTTGCATCTTTCTAAAGTTCATATTACTAAAGAGCATAACGGAAACTTCATAAAAAGTGTCTACAAAGAAATAAAGCAAAAGGTACTGCATTAA
TACTATTGTTTCATTAGGCTAAGAAGTTTCTGCTTTTCTAGGACTACTTGTGAATGTCACTAAGTGAGAACTCCTTAACGTGCAAAACTTTAATGGTTGA
ACCTATTTCTCCAACTGAAAAGGAAGGAAAAAACTTGACCAAATTGTACCTAAACCTATTAAGAAACTACCAATTTTCAAATTTAAGGAATGGTAAAAAT
GTAGTCCTTTACGAAGTCTTCTTGTGGGCATCAACAGCTTGAACACAAAGGGTTAGTAACAAGATAGTACAAGCAGTCATCCACTTTAGAAGCAGAAGAC
TGTGCCTTGCTAATTCAATTTACGGGTTGAAAAACTCATGTAGTATCAAAAAATACAAGCAATAATCCAATTCAGAAGCAGAAGACTCTCGTCAATTAAA
CTCCATTGGTGCAAACTCCAGCTTGTAACAAGCCCTGTGAAAAATTCACATTCTATTACCACCCTGTGAGCTTCAGACAAGGTCAGAGAAAATACCTGGA
ATGAAATAAAACATCAGTAGCAGATAAATCAGTCTTGGAAAAAGAAAAAACGTGCCAATCTGGCAATCATTGAAGGACCACTATGAAAAGAAAATTTCAC
ATCACATTTTGAATCGTAGATTTTCTAGTATAAATGAAGTTCTGATTTCTCAACAGTAGTAAATAATTAAACATTCAATTCGTTCATGTGGTTGCATATG
CAATATATAACACGAACTAAAAAAACATTTGCTTATTCTGCAGCACAAGTTCCTTCTTTGAAGACATTACCATATTAAAAGCACTATTACGACAATGACA
CTGAAATCACATCTTCAAATAGGATGATGCAAGGACTTACGTAGCGATGCCATCAGAACATCAACTGTATATAGCAATCGAAATCAATTTCACAGGGTTC
TATGGTATCAATTTGCTTCGAAAACCATGTACATATGATATTAGATCAGTGGACTAAAGATGGTGCGTGGCAGTCCGTAGGAGATGGAACACTAAGAATG
GTGTGGAGAGAGAGACAGGAGGGGCATCTACGCCAACATTGTAGAGAAGAGAGGGGTTCGACATGAATCAGGGGAAATGAATTCATGGGTGGATGGTTTT
TTTAGTGGTGGAAACATAAAGATGTCCGAGATAGGCAAATGAAGTAACACTGCTGCTCATTTCAATCGAATATTAATTTTGGGCAATAGCAGTGGTGCCT
ATTCAAGTAAATGCTACCT