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Detailed information on CNT30105868


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000057, E-value = 7e-149

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690363Oryza longistaminataOryza sativa57.7980.5896.43560forward
CNT3099497Oryza longistaminataOryza rufipogon53.1569.2296.5515forward
CNT30575074Oryza longistaminataOryza barthii54.0882.7896.76524forward

Expression of CNT30105868

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MEKSGLCFLFHHLQMYHSPLLQLDPLLTCLTYCESQLHNLSEAPPYK*

>peptide 2 (29 aa)
MGSQGKVRPHLMLNGCLTSCGNLHLHNQS*

>peptide 3 (29 aa)
MGSQGKVLPHLMLNGCLTSCGNLHLHNHS*

Sequence

>CNT30105868
AAGCAATTTGGATGGTGGCATTGATGGTGGCTGTACTTTGATGGGTTGTGTGTGAAGGCTGTTATTTGGGACCCTTAAGAATGGGTAGTCAGGGGAAGGT
ACGTCCTCACTTGATGCTGAATGGGTGCTTAACCTCTTGTGGTAATCTTCATCTTCACAATCAGTCTTAGAAATGGGATGACATGTTGGTGTGTGCAGGT
TCTGATCAGCCATATGATCACTACTAGCACTCTTCACACTTGAACTTGATGGGAAAGTCAGGCCCGTGCTTCCTTTTTCACCATTTGCTTTACTTTCCTT
TTTATTAAGCAATTTAGATGGTGCCAATAAAGGCGGCTGTACTTTGATGGGTTGTGTGTGAAGGCTGTTATTTGGGACCCTTAAGAATGGGTAGTCAGGG
GAAGGTACTTCCTCACTTGATGCTGAATGGGTGCTTAACCTCTTGTGGTAATCTTCATCTTCACAATCATTCTTAGAAATGGGATGACATATTGGTGTGT
GCAGGTTCTGATCAGCCACAGAATCACTACTAGCACTCTTCAGGCTTGAACTTGATGGAAAAGTCAGGCCTATGCTTCCTTTTTCACCATTTGCAAATGT
ATCACAGTCCACTACTACAACTTGATCCATTGCTGACTTGTTTGACATATTGCGAGAGTCAACTACATAACTTATCGGAGGCTCCACCATACAAGTAGTC
ATTTTAACTATATCATCTGGTCTTCCCCTGGTAGCCTTGTTATATGACATACTAAACTGTTTCCCACTGTCCGGAGGAGAGGAGATTGGAGAAAATTCGT
CTTCATCAAAGTGTTGGTCATAACCTACAGTTGGATAGTGTTGATGGAGTATAGATGGATCAGCATCTAGTTGGCCAGATTCTTTTCTGACTGATGACCT
GTATATATGAAATTATTGGCCATAAGTTTAAAAGTAACATGTGATTTTGACATATTATAATGAAAAAAG