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Detailed information on CNT30105840


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005134, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30351991Oryza longistaminataEragrostis tef18.1621.3691.3138forward
CNT30101696Oryza longistaminataOryza rufipogon69.0845.2298.86525forward

Expression of CNT30105840

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MAPFGEGLAISMFEDVQEEVYPGQSIKWILIGHM*

>peptide 2 (31 aa)
SEEFRIQSRSSMKLLDTCMPKHGSVWRRLSN*

>peptide 3 (56 aa)
MLGSSQLCHCKMTREIHNRLESSEQEIVSMCRSHSMSLQTDFIFVKKQKTKMNFMV*

Sequence

>CNT30105840
CTCTGAAGAGTTCAGAATTCAGAGCAGAAGTAGTATGAAGCTTCTTGACACATGCATGCCAAAACATGGCTCCGTTTGGAGAAGGCTTAGCAATTAGCAT
GTTTGAGGATGTGCAAGAGGAGGTTTATCCAGGACAATCTATAAAGTGGATTCTGATCGGGCACATGTGAGAAGTACATTGGACAAGAGGCTGACCGGTC
CATTTGCCAGGGCCATCAATGGCAGATTGTAAATAAGGACTTGTCCCATTGTTTTGGCAGCCACAAGAGCATGTTGGGCAGTTCACAATTGTGTCATTGT
AAAATGACGAGAGAGATACACAACAGGTTGGAGTCTTCTGAGCAAGAAATTGTGAGTATGTGCAGGTCACATTCCATGTCACTGCAAACAGATTTTATTT
TTGTTAAGAAACAAAAAACAAAAATGAACTTTATGGTATAAGATTTTGACAAATTTAACTTCTATATGGAGCCACTATGATGCATGTCTGCATTTGACGA
ATATTATTTGCTAGAGAATAATATTAACTGAATTAGCTGTATTCTATTAGGCCAACATGCCAAGTAATATAACCTATTATCAACTATTATTCACAGTTGG
ACTCATCTCACTTTGAGAACAATCTCTTTCCCTTCAACAGATTACATCTTCTTACTAACCCTACACATAAGGTAACCTAGTTCAACCATGCAATTGTTGT
TTAGGCTGCAAATGCATTTCCTCAAAGAATGAAAGCAATTGGTATTAAACATTAAAGAAC