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Detailed information on CNT30105837


BLAST search results

BLAST vs Swiss-Prot:
sp|Q60E70|COBL3_ORYSJ, E-value = 4e-59

BLAST vs NONCODE:
NONORUT005134, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553869Oryza longistaminataOryza glaberrima80.1396.2499.8512forward
CNT3067447Oryza longistaminataLeersia perrieri67.4576.2891.65431forward
CNT30596208Oryza longistaminataOryza meridionalis83.8829.6399.63536forward
CNT30101622Oryza longistaminataOryza rufipogon80.7551.34100516forward
CNT30604101Oryza longistaminataOryza punctata47.7398.3996.72305forward

Expression of CNT30105837

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MTQLSPLKYTRCGKAHPLSKVKSLESLRRRSSDCAFPSGPACMSKSL*

>peptide 2 (35 aa)
MAPFGEGLAISMFEDVQEEVYPGQSIKCTPWNLTT*

>peptide 3 (49 aa)
LLVGIYTMPWAAFAPWLISEEFRIQSRSSMKLLDTCMPKHGSVWRRLSN*

Sequence

>CNT30105837
CTCTTCTCGTGGGTATTTATACCATGCCATGGGCGGCATTTGCTCCCTGGTTGATCTCTGAAGAGTTCAGAATTCAGAGCAGAAGTAGTATGAAGCTTCT
TGACACATGCATGCCAAAACATGGCTCCGTTTGGAGAAGGCTTAGCAATTAGCATGTTTGAGGATGTGCAAGAGGAGGTTTATCCAGGACAATCTATAAA
GTGCACACCATGGAACCTGACAACTTGAAGCTCACCGAATTTCTTGGTTTCACTCATCATGCATAAGCCAGCAAAGTAGCCAACACAATCGAAAATACCA
AAACCGAGAGTGTCAATGGTTGTTTTGTCAGAGGACTTGCATTAGGCAACCATGGATATGCATCCGGAGGTGGCATGACACAATTATCACCATTGAAGTA
CACGCGGTGTGGGAAGGCCCATCCCTTGTCAAAGGTGAAGTCCTTGGAATCCTTACGCAGAAGAAGTTCTGACTGTGCATTTCCAAGTGGACCAGCTTGC
ATGAGCAAATCGTTATAGAACTTAACTCCCCAGAACATCGCAGTATCATCTAAAATAGAAGGAATAAACTTCATCAGAGAAAGAGAGAGAGAGAGAGAGA
GAGATAAAGGAACGTATTACAAGTGCACTCCAATTTTCT