Detailed information on CNT3010578


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 5e-106

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695884Zea maysOryza sativa75.8952.5893.82469forward
CNT30395272Zea maysTriticum turgidum75.449.3191.85466forward
CNT30250555Zea maysAvena sativa74.9245.891.14463forward
CNT30656522Zea maysTriticum dicoccoides74.9262.2394.17463forward
CNT30685729Zea maysTriticum urartu74.4346.8493.48460forward
CNT30345515Zea maysEragrostis tef75.454.8995.28466forward
CNT30596879Zea maysOryza meridionalis76.0543.2894.04470forward
CNT30103295Zea maysOryza rufipogon75.8938.5791.9469forward
CNT30582821Zea maysEchinochloa crusgalli75.575093.36467forward

Expression of CNT3010578

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MVQTENQRALTCIRTPKGHRRRLPHLPGTKLVA*

>peptide 2 (34 aa)
MWSARRPFLSSLTLSSAKASGSSARPSGSKLPPG*

>peptide 3 (41 aa)
RNEKERGKIMTMNTIIPCRLNNSLHHGTNRKPACAHMHPDT*

Sequence

>CNT3010578
GCAGGAACGAAAAAGAGAGGGGAAAAATAATGACAATGAACACAATTATTCCTTGTCGATTGAACAATAGTTTACATCATGGTACAAACCGAAAACCAGC
GTGCGCTCACATGCATCCGGACACCTAAAGGTCACCGGCGGCGCCTCCCTCACTTGCCGGGGACGAAGTTGGTGGCGTAGGCCCAAGCGTTGTTGTTGAC
GGGGTCGGCAATGTGGTCAGCGAGGCGGCCGTTCTTGAGCTCCTTGACCTTGAGCTCGGCGAAGGCCTCGGGGTCGTCGGCGAGGCCGAGCGGGTCGAAG
CTGCCGCCGGGGTAGAGCGGGTCGACGACCTCGCCGAGCGGGCCGCCGGCGATGCGGTAGCCCTCGACGGCGCCCATGAGCACGACCTGGCAGGCCCAGA
TGGCAAGGATGCTCTGCGCGTGGATGAGGCTCGGGTTCCCGAGGTAGTCCAGCCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCACACGGCCTC
GCCGAACTTGACGCCGTTGCGGGCGAGAAGCTCCGGGAAGACGCAGCCGAGCGCGCCCAGCATGGCCCAGCGGGAGTGGATCACCTCCAGCTCCCGGTTC
TTGGCGAACGTCTCCGGG