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Detailed information on CNT30105740


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9M9X0|RLP32_ARATH, E-value = 9e-13

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552167Oryza longistaminataOryza glaberrima17.9542.6192.74124forward
CNT3099807Oryza longistaminataOryza rufipogon23.8816.5593.94165forward
CNT30574695Oryza longistaminataOryza barthii27.2137.692.02188forward

Expression of CNT30105740

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MVEPSKGGGAPVSGRRRPELLSRSAWWMQ*

>peptide 2 (42 aa)
MILQLQWRIQGRIPVQKTGTTQYLRISSWKGSHSELSCCCNP*

>peptide 3 (43 aa)
MSCWCMMRNEVILVFSPPNLLYDRFSISRKSKDANSCGMTPES*

>peptide 4 (80 aa)
MEQLNNILDRFLMGMPHDTTTAMANPRPNPSPENRNNAISTDFFLEGITFRTVMLLQPLDSGGPHKSLFPINELLVYDAK*

Sequence

>CNT30105740
TAGGCCCTTTAACTAATTTCATATTGCTGGGGAGCACGGGCCGATGGTTGAGCCGTCGAAGGGCGGAGGCGCTCCAGTGAGCGGCCGGCGGCGGCCGGAG
TTGCTCTCCCGGTCGGCGTGGTGGATGCAATAGAAGGCTCAAGAACCAAGCCATTGCTATTCTCAATAGGAGCAGGCTCAGATTTTCTTATCAAAGAAAC
AACAGAAGCAATCGATGGAACAACTCAACAACATCTTAGACCGTTTTCTAATGGGAATGCCCCATGATACTACAACTGCAATGGCGAATCCAAGGCCGAA
TCCCAGTCCAGAAAACAGGAACAACGCAATATCTACGGATTTCTTCTTGGAAGGGATCACATTCAGAACTGTCATGTTGTTGCAACCCTTAGATAGCGGA
GGACCGCACAAATCATTATTCCCCATAAATGAGCTGTTGGTGTATGATGCGAAATGAGGTGATTCTGGTATTTTCCCCTCCCAACTTGTTGTATGACAGG
TTTAGCATTTCGAGGAAGTCCAAGGATGCTAATTCCTGTGGAATGACTCCTGAAAGCTGATTTGAAGATAGGTCCAAAGCTTCCAGCTGCTTCAACCCAC
CGAGCTGAGATGGAATTGGCCCAGTGAGGAAGTTATGNNNNNNNNNNTGAAGCAAGAAGCAAAACAAGTTCCCCAACAATTCCAGGGATGC