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Detailed information on CNT30105638


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678235Oryza longistaminataSetaria viridis18.0755.386.23167forward
CNT30522059Oryza longistaminataSetaria italica18.0734.3686.23167forward
CNT30189491Oryza longistaminataSecale cereale11.839.3582.57109forward
CNT30553120Oryza longistaminataOryza glaberrima52.0678.2197.71481forward
CNT30448340Oryza longistaminataSaccharum spontaneum28.0347.2686.49259forward
CNT30149Oryza longistaminataZea mays23.814083.64220forward
CNT30595883Oryza longistaminataOryza meridionalis48.2778.9498.21446forward
CNT30575498Oryza longistaminataOryza barthii52.0676.7197.71481forward

Expression of CNT30105638

Peptides detected in this lncRNA

>peptide 1 (88 aa)
MREMDKSLVNLEPNRKDQKQKEANDAELEPPTLSGQAARESHCPHARDGISRPPRPIILLIGDRGLTKLGGDSDGRPTDTASAARAES*

>peptide 2 (47 aa)
MTQLSPLKYTRWGKAHPLSKVKAIESFRRSSSDCAFPSGPACMSKSL*

Sequence

>CNT30105638
CTGATCTCTGAATATTTCAGGATTCAGAGCAGCAGCTCTTTGCACAAGCCAAAACATGGTTCCCTTTGAAGAAGATCTTGGCACAAGCCAAAAACATTGA
GCGTGTTTGAGGACCTGGAACCAAGATCATCTATGAAGGAAAGTAGCCAACACAATCCAAAATGCCAAGAGCGGGAGCGTCAATGGTTGTTTTGTTAGAG
GGCTTGCATTAGGCAACCATGGATATGCATCTGGAGGTGGCATGACACAATTGTCACCATTGAAGTACACACGGTGGGGGAAGGCCCATCCCTTGTCAAA
GGTGAAAGCCATAGAATCCTTCCGCAGAAGTAGTTCTGACTGCGCATTTCCAAGTGGGCCAGCTTGCATGAGCAAATCGTTGTAGAACTTTACTCCCCAG
AACATTGCAGTATCATCTAAAATAGAAGGAACAAATTCTGTCAGAGAGGTTGAAGGAGGGAGGGGCATGTCACAGATCCATCACCGAAATGCTTGAGATG
AAGATTCAGCAAAGATAGCAAAGACTGGTGCTGGTTAGAGTGACAAGAAAGCTCCGTGTGTGCTCCTCCCAATTGCCCTAAGCTACCTAATTCGACCACA
GAATCCGTGCAAGCATGAGAGAAATGGACAAGTCCCTAGTGAATTTGGAGCCCAACCGGAAGGACCAAAAACAGAAAGAAGCCAACGACGCCGAACTGGA
GCCACCGACACTGTCAGGACAAGCAGCCCGGGAGTCGCATTGCCCACACGCACGCGACGGAATCTCGCGGCCACCTCGTCCGATCATCCTCCTCATCGGC
GATCGGGGCCTAACAAAGCTCGGCGGCGACAGCGACGGCCGACCGACGGACACGGCGTCGGCAGCACGAGCAGAGAGCTAGCGAGATGATAGAGGTGGCA
CCAGAAAGCGGGGGAAGCAAAGCC