« Back to Oryza longistaminata search


Detailed information on CNT30105598


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8S8T4|UXS4_ARATH, E-value = 5e-82

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522345Oryza longistaminataSetaria italica44.9941.3387.74310forward
CNT30530404Oryza longistaminataEucalyptus grandis50.0797.1884.93345forward
CNT30316147Oryza longistaminataCorylus avellana52.9848.9982.74365forward
CNT30703138Oryza longistaminataQuercus lobata40.3553.0582.73278forward
CNT30499549Oryza longistaminataCoffea canephora42.9660.4178.38296forward
CNT3021362Oryza longistaminataCitrullus lanatus26.4227.9680.22182forward
CNT3068683Oryza longistaminataQuercus suber57.4780.4981.31396forward
CNT30524728Oryza longistaminataPhaseolus vulgaris37.347.5978.99257forward
CNT30506399Oryza longistaminataNicotiana attenuata20.3242.380140forward
CNT30182233Oryza longistaminataSecale cereale38.4642.686.42265forward
CNT30289293Oryza longistaminataTriticum aestivum17.2739.1489.92119forward
CNT30223417Oryza longistaminataHordeum vulgare22.6468.7289.74156forward
CNT30590847Oryza longistaminataMusa acuminata28.7443.3381.82198forward
CNT30539234Oryza longistaminataBrassica napus59.0744.4879.61407forward
CNT30143836Oryza longistaminataMedicago truncatula23.3727.6280.75161forward
CNT30244810Oryza longistaminataAvena sativa38.4632.883.02265forward
CNT30261302Oryza longistaminataBrassica rapa55.8874.4780385forward
CNT30455867Oryza longistaminataSaccharum spontaneum65.7569.1691.39453forward
CNT30131528Oryza longistaminataLolium perenne46.0168.7688.96317forward
CNT30231964Oryza longistaminataAnanas comosus27.2915.4183.51188forward
CNT3066796Oryza longistaminataLeersia perrieri35.5662.9886.12245forward
CNT30653881Oryza longistaminataRosa chinensis58.0637.4581.5400forward
CNT30718631Oryza longistaminataMalus domestica golden56.0267.2580.57386forward
CNT30339698Oryza longistaminataEragrostis tef59.9433.4489.59413forward
CNT30363710Oryza longistaminataSorghum bicolor33.2439.0193.45229forward
CNT30595456Oryza longistaminataOryza meridionalis38.4646.4987.55265forward
CNT30360575Oryza longistaminataLactuca sativa35.9941.1379.44248forward
CNT30411763Oryza longistaminataPapaver somniferum23.5114.3780.25162forward
CNT30570592Oryza longistaminataVitis vinifera34.8374.381.25240forward
CNT30645151Oryza longistaminataCannabis sativa23.3716.8981.37161forward
CNT3054595Oryza longistaminataAmborella trichopoda6.5321.7493.3345forward
CNT30319856Oryza longistaminataAsparagus officinalis32.6680.3684225forward
CNT30102778Oryza longistaminataOryza rufipogon11.7632.0287.6581forward
CNT30574680Oryza longistaminataOryza barthii77.3658.1997.75533forward
CNT30580197Oryza longistaminataEchinochloa crusgalli66.3355.4691.03457forward
CNT30499107Oryza longistaminataDigitaria exilis35.9963.4389.11248forward
CNT30115589Oryza longistaminataOryza nivara77.3637.3597.94533forward
CNT30594668Oryza longistaminataEragrostis curvula25.8352.8284.83178forward
CNT30603506Oryza longistaminataOryza punctata56.4677.4996.92389forward
CNT30174824Oryza longistaminataVigna angularis57.1841.4779.44394forward
CNT30550386Oryza longistaminataOryza brachyantha39.9110096.36275forward
CNT30337932Oryza longistaminataCynara cardunculus26.1221.9581.11180forward
CNT3064271Oryza longistaminataSelaginella moellendorffii22.2127.8279.74153forward

Expression of CNT30105598

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MGSTTSWRITSKRGLARWCATLSLRPVKKLSTTITLSPRSTRRSTRWLPTNPAPPVTSTRSARRRRPSGTFPPADP

Sequence

>CNT30105598
GGTTATGTGATGATCAATTTGAGAAATTTTAAATTTCATTGTATGATGATCAATTTGGGAAGGAGGGAGTAATACGGAGTATTGACAGCATAGGTGTTCC
CATACTCTTATCTGTTATCCAACAAACAACTCAGTCCAAACATGAAAGGTAACTATTAAGTTAATTTGTCAGTTAAACACTAAGACATTAAATAATATGG
CAAACAAAATATTGGCAGAGCATTATTACCAATGGGGTTGACATTTCCCCAGTAAGTCTCCACCTGAGGGTGCTGGAGGGGATCGCCATATACCTCACTG
GTGCTGGTAAGGAGAAATTTTGCCCCAATCCTCTTGGCCAATCCAAGCATGTTCAGTGTCCCAACTACATTGGATATGATGGTCTTGATGGGGTTGTACT
TGTAGTGCACGGGGCTGGCGGGGCAGGCGAGGTGGTAGATCTGGTCGACCTCGAGCAGGATGGGCTCGACGACGTCGTGGCGGATCACCTCGAAGCGCGG
GTTGGCGAGGTGGTGCGCCACGTTGTCCTTGCGCCCCGTGAAGAAGTTGTCGACGACGATCACGCTGTCGCCGCGCTCCACCAGGCGGTCCACGAGGTGG
CTCCCGACGAACCCGGCGCCGCCCGTGACGAGCACCCGCAGCGCGCGGCGGCGGAGGCCCAGCGGCACCTTCCCCCCGGCGGACCCGTG