Detailed information on CNT30105511


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672513Oryza longistaminataSetaria viridis24.815.588.7162forward
CNT30224666Oryza longistaminataHordeum vulgare4045.0587100forward
CNT30555741Oryza longistaminataOryza glaberrima8292.7699.02205forward
CNT30264857Oryza longistaminataBrassica rapa24.820.687.162forward
CNT30129112Oryza longistaminataCorymbia citriodora3020.168475forward
CNT30367300Oryza longistaminataSorghum bicolor44.824.8385.71112forward
CNT30597166Oryza longistaminataOryza meridionalis74.866.3197.33187forward
CNT3027096Oryza longistaminataPopulus trichocarpa41.629.8982.69104forward
CNT30104583Oryza longistaminataOryza rufipogon8296.798.54205forward
CNT30578457Oryza longistaminataOryza barthii10044.0998250forward
CNT30118059Oryza longistaminataOryza nivara71.260.7596.07178forward
CNT30604899Oryza longistaminataOryza punctata88.895.2896.85222forward
CNT30333329Oryza longistaminataCynara cardunculus3819.6383.1695forward

Expression of CNT30105511

Peptides detected in this lncRNA

>peptide 1 (82 aa)
LSNNSLKRLEGGERCGEIISPDVAPIHNTSKEVLSRGETSTLDKVNSLGSTDKVKTISSHTVQGCEGPAVKRQYQCSATKKKK

>peptide 2 (56 aa)
FPTIASRDSRVVRDAARSSAQMLRPSTTPAKRYFPEGKPALLIRSIVLAPRIRSKP*

Sequence

>CNT30105511
CTTTCCAACAATAGCCTCAAGAGACTCGAGGGTGGTGAGAGATGCGGCGAGATCATCAGCCCAGATGTTGCGCCCATCCACAACACCAGCAAAGAGGTAC
TTTCCAGAGGGGAAACCAGCACTCTTGATAAGGTCAATAGTCTTGGCTCCACGGATAAGGTCAAAACCATAAGCAGTCACACTGTTCAGGGATGTGAGGG
TCCTGCAGTGAAAAGGCAGTATCAGTGTTCTGCCACTAAAAAGAAAAAGC