Detailed information on CNT30105441


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690175Oryza longistaminataOryza sativa59.7855.4894.81385forward
CNT30521273Oryza longistaminataSetaria italica9.7824.2390.4863reverse complement
CNT30456600Oryza longistaminataSaccharum spontaneum10.8724.9185.7170reverse complement
CNT304607Oryza longistaminataZea mays10.7125.0985.5169reverse complement

Expression of CNT30105441

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MKPKVVKNMNKQRITSRTVCKQRRYWIRGKRGKTEIGPDMTGIH*

>peptide 2 (90 aa)
FFFLKSVPAAVSFPVSYAVARLGDIYLQQGEGLPRRPRGGGSRCLHPFSLWRFGHEDGASAGVVTVMLTRAMSSHRRRLLLLTQCDVLCR*

>peptide 3 (66 aa)
MPKSIPVATVAIGNAENAGLLAVRMLASRDPELGDKATEYQHDLRDMVLEKGKRLEFRNEKIAYLPS

>peptide 4 (65 aa)
FFFSNRFQLPSPSRSHMPSLDLETSIFNKEKVFLAGHEEEVRAACIPSLFGGSATRMELALVLSR*

>peptide 5 (59 aa)
FFFSQIGSSCRLLPGLICRRSTWRHLSSTRRRSSSPATRRRFALLASLLSLEVRPRGWS*

>peptide 6 (30 aa)
MRKMQVYWQLGCWPQEILSWETRQLNTSMI*

Sequence

>CNT30105441
TTTTTTTTTTCTCAAATCGGTTCCAGCTGCCGTCTCCTTCCCGGTCTCATATGCCGTCGCTCGACTTGGAGACATCTATCTTCAACAAGGAGAAGGTCTT
CCTCGCCGGCCACGAGGAGGAGGTTCGCGCTGCTTGCATCCCTTCTCTCTTTGGAGGTTCGGCCACGAGGATGGAGCTAGCGCTGGTGTTGTCACGGTGA
TGCTGACGAGGGCGATGAGCTCTCACAGACGCCGTCTTCTTCTCCTTACCCAATGCGACGTGCTTTGCCGGTAACAGTTCTGAAAAGGTCAAGAAAATGA
AGCCGAAAGTTGTAAAGAATATGAATAAGCAACGCATCACTAGCCGTACTGTATGCAAACAGAGGAGATACTGGATAAGGGGGAAAAGGGGAAAGACAGA
GATAGGTCCTGACATGACGGGCATTCACTAGAGTACTAACAGATGCCGAAAAGTATTCCTGTTGCTACTGTTGCAATTGGAAATGCGGAAAATGCAGGTT
TATTGGCAGTTAGGATGCTGGCCTCAAGAGATCCTGAGTTGGGAGACAAGGCAACTGAATACCAGCATGATCTGAGGGATATGGTGTTGGAGAAAGGAAA
AAGGCTTGAGTTCCGGAACGAGAAAATTGCATATCTACCATCGC