Detailed information on CNT30105423


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596015Oryza longistaminataOryza meridionalis30.0940.2488.62167forward
CNT30575883Oryza longistaminataOryza barthii65.5920.7592.31364forward

Expression of CNT30105423

Peptides detected in this lncRNA

>peptide 1 (82 aa)
XXXXXXXXXXXXQCAAKEAGAEGHGDGDRRRELLDMVMVIVMGRRRREGHCCGGGGSHYYSPPLIAREEEQCSALASRLSLR*

>peptide 2 (34 aa)
XXXXXXXXXXXXAVRGQGSRSGGARRRRQTEGAA*

>peptide 3 (37 aa)
MWIDLIQCLSTLPTLSRSFRSTPSPSPLLDRDQGRTFT

>peptide 4 (37 aa)
AXXXXXXXXXXXGSARPRKPERRGTETETDGGSCLTW*

>peptide 5 (62 aa)
MDAQNERRIISPTELVLLMSSRVMWRCGLILSSVCRRYPPSLDLSARRQARRRYSTGTKDAPS

Sequence

>CNT30105423
GCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCAGTGCGCGGCCAAGGAAGCCGGAGCGGAGGGGCACGGAGACGGAGACAGACGGAGGGAGCT
GCTTGACATGGTGATGGTGATAGTGATGGGAAGGAGGCGGCGCGAGGGCCATTGCTGCGGTGGTGGCGGGAGCCATTATTATTCCCCACCACTAATAGCT
AGAGAAGAAGAACAATGCTCTGCTCTCGCCTCTCGCCTCTCGCTTCGCTAGCTACCTACTGACTGGAGTGGAGTGCTCTACTACTGTTTGCTTGCTCTTA
ATAACAAGAGAAGAGAGAAGCTTGAGATGGCTGGCTGGCTGGCTGGATCTGGAACGAATTCTGGATGGACGCACAAAACGAACGACGAATTATCTCCCCT
ACGGAATTAGTACTACTGATGAGCAGCAGAGTAATGTGGCGATGTGGATTGATCTTATCCAGTGTCTGTCGACGTTACCCACCCTCTCTAGATCTTTCCG
CTCGACGCCAAGCCCGTCGCCGTTACTCGACAGGGACCAAGGACGCACCTTCACC