Detailed information on CNT30105297


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30369870Oryza longistaminataOryza glumipatula13.2620.7493.57140forward

Expression of CNT30105297

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MEAGAAEHRGRVSRHTVLWLADGEPGCETSSSTRRFRAHSVVLQL*

>peptide 2 (67 aa)
ASPRAGQRRRRARGGVLQPVTRKGSTTSKPNAFSLLRNFICRLLVRARYHDIISQLLAPRIPCDLII*

>peptide 3 (65 aa)
KPRRGRGSGGVAREEEYSSRSLAKVVLRPSPMHSPCYGISFAVCLYVHGIMISYPNCWLPESPVI*

>peptide 4 (92 aa)
MTTPTARRPSRTATWRRCCRRTGWCSAGESPGNGGRRCRASRKGEPTHCALAGRRRAGLRDFVVDSSFPSTQRSTAVVVESEVVTSLTGRVA*

>peptide 5 (69 aa)
MRQSDEPEPVARASPSAAPKPESDIDDHADGEAAEPDCDLEALLPPHGVVFGRRVARQWRPALQSIAEG*

Sequence

>CNT30105297
AAGCCTCGCCGCGGGCGGGGCAGCGGCGGCGTCGCGCGCGAGGAGGAGTACTCCAGCCGGTCACTCGCAAAGGTAGTACTACGTCCAAGCCCAATGCATT
CTCCCTGTTACGGAATTTCATTTGCCGTTTGCTTGTACGTGCACGGTATCATGATATCATATCCCAACTGCTGGCTCCCAGAATCCCCTGTGATCTGATC
ATCTGACCCATCGCCATCGGTGGATCAAATCTGAAGCCCTGACGAATCACGCGCAAATCGCCCTTACTATTTCCAAGCTACGACTGTGTTTAGTTCAGCG
CAAAGTTTAGATTTTGGTTGAAATTAAAGATGATGTGACTGTAAAGTTGTGTGTGTATGATAGGTTGATGTAATGGAAAAGGACTGAAGTTTGGATCCAA
ACTTTGGATCTAAACACAGCCTATACTATAGGCCGTGGCAACAACTCTTCGTGTCCTCGTGAATTTCCAGTAAATCCACTCACTCTCAAGATTCCATCTG
TCCAGGTCATGCGCCAGAGTGACGAGCCGGAGCCCGTGGCGAGGGCGAGCCCGTCCGCCGCGCCGAAGCCGGAGAGCGACATTGATGACCACGCCGACGG
CGAGGCGGCCGAGCCGGACTGCGACCTGGAGGCGCTGCTGCCGCCGCACGGGGTGGTGTTCGGCCGGCGAGTCGCCCGGCAATGGAGGCCGGCGCTGCAG
AGCATCGCGGAAGGGTGAGCCGACACACTGTGCTCTGGCTGGCCGACGGCGAGCCGGGCTGCGAGACTTCGTCGTCGACTCGTCGTTTCCGAGCACACAG
CGTAGTACTGCAGTTGTAGTAGAAAGTGAAGTAGTGACAAGTCTCACTGGACGTGTAGCGTGACAAGTCATGTAGAATAAAGCTACGAGTACCTTGTGGA
TATATCCAGCTGATGCATGTACGTATACTATGGATTGATGATGGGTGTAACGTGACAGATCGTATACTCCATTTAGTTTGCACCTAAGAAGCCTTGCATG
TGCCTGAAATAATCTAGCTCTTACTGTGTCCAGACAGCTGATAAGCGAGAACAAAG