Detailed information on CNT30105280


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SU35|ERLL1_ARATH, E-value = 2e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552993Oryza longistaminataOryza glaberrima86.5494.7493.15540forward
CNT30684877Oryza longistaminataTriticum urartu26.7626.3488.02167forward
CNT30369831Oryza longistaminataOryza glumipatula83.8185.3292.93523forward
CNT30100768Oryza longistaminataOryza rufipogon97.9287.0491611forward
CNT30575695Oryza longistaminataOryza barthii96.4794.892.86602forward
CNT30116368Oryza longistaminataOryza nivara86.0686.291.43537forward

Expression of CNT30105280

Peptides detected in this lncRNA

>peptide 1 (90 aa)
MDGAAALVAALEAGRDGAAAVDAKDVGAEGGAEAHGGLKVGEPLDEAATRLPRRRPQLHVYQPVQHVRAHPQLQRVDRASSSASSSPAAAA

>peptide 2 (31 aa)
MRSIEYKLINQLCRYTHTRRRMKHALITSWN*

>peptide 3 (69 aa)
MPRMLARRAVQRHTAASRSASPWMRLQHGCRGGVPSCTFISPFSTFAHTPSFSVSIGHLPPLPPPPPPPL

Sequence

>CNT30105280
AACAAGAGCTAGCTAGTACAGTACGTGTAGAACAGGCATGCAGAAAAGACGAGATGCAGTACGTACTGATATGATGCATATACGATGAGATCCATCGAGT
ACAAATTAATTAATCAATTATGCAGATACACACATACACGTAGACGAATGAAGCATGCTTTAATTACGTCGTGGAACTGAATCATATGCATGCATATATA
TCTCTTTAATTTACGGGATGAAGGAGGAAATTAAGGCACGCAGATACATATGACGATGATTTGAACAAGGAACAAATTAGACATAGATAGATTGATATAT
AGTTGTACGTGGCCTGGTGGTCGTTCTTCGTTCTCGTGTGTAGTGAGGAATGGATGGAGCTGCAGCTCTAGTTGCTGCACTGGAAGCCGGAAGGGACGGA
GCGGCCGCAGTTGATGCCAAGGATGTTGGCGCGGAGGGCGGTGCAGAGGCACACGGCGGCCTCAAGGTCGGCGAGCCCCTGGATGAGGCTGCAACACGGC
TGCCGCGGCGGCGTCCCCAGCTGCACGTTTATCAGCCCGTTCAGCACGTTCGCGCACACCCCCAGCTTCAGCGTGTCGATCGGGCATCTTCCTCCGCTTC
CTCCTCCCCCGCCGCCGCCGCTTC