Detailed information on CNT30105184


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000175, E-value = 2e-105

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690372Oryza longistaminataOryza sativa7.4328.6790.65246reverse complement
CNT30552111Oryza longistaminataOryza glaberrima7.56100.8193.2250reverse complement
CNT30369405Oryza longistaminataOryza glumipatula7.6241.3194.05252reverse complement
CNT30100036Oryza longistaminataOryza rufipogon7.6220.8194.44252reverse complement
CNT30577253Oryza longistaminataOryza barthii7.4325.8994.72246forward

Expression of CNT30105184

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MGSCALTLALGKRIGNGLEYMTKIEVNKEFIDQ*

>peptide 2 (36 aa)
THSDKKAASSFINKVECNGDTSRFSSISCLKLKSNR*

>peptide 3 (45 aa)
MTPFLLCTLLTFYIANATTKAVCFSYRIEHASIFFNSFDEQECFI*

>peptide 4 (52 aa)
MITPFSKVYLKFGLLWLNVQKNVELSYSSLLPIVTSRKSTLEEQVVSCNRSY*

>peptide 5 (37 aa)
MLHQREKIDKKKVFSKNKFRRSILSSIFIPNSKPFVY*

>peptide 6 (43 aa)
MPQLKQYVFHIESNMQAFFLTPLMNKSALYDMDNKNRCSLIVE*

Sequence

>CNT30105184
CACGCATTCAGACAAGAAGGCTGCTTCATCATTCATCAACAAAGTAGAGTGCAATGGAGACACCAGTAGGTTCTCATCTATATCCTGCCTCAAGTTGAAG
AGTAACCGGTAAAGTACAAACACAACCATGTATACATATATTTATTGCTAATTGCTAAAAGAAACAAGTTTGACCAATGTACAAGGTATTGAGAAGCAAT
GCAACGATGCCCCTGGTCTCTTCATAGGACAACTTAATTCGACCATCTATCAATAAGCCTTTATCCGGCGAGAAAGGTGCTTTTGCTGAGGCAACTAGCT
CAAGCAAAAGCAGAAACCTCAAAGAACTAGGGCATATGGTTGCCTTCTTTCTACTCTTCTTGGTTGACAGCTAACAACAGCTTCCTTATCACCTGAAATG
GGCATCAAATGGCAGAAGAGTATGAGCACAAGTGGAGATCTTTGTAAACTTTAAGGAATAATATTTATATACGCTGCAGCAAGGTCACTAAGAGCAGGTA
CAATAGCAGGCTATAATCCAGCTGCAAACATATTTTAATAAGATAAAAGATAAGAGAGAAGAGCAGCGGGCTACAAATCTGTAGCCAGCTGCAGCACGGA
CTTCAAGACACAATGTGTGTATGACAGTGGGACCATATGCTAATAGTATAGTAAGCAACTATTGTATGAATTGGCTATTAGATTAGCTATAGATGAATTG
GAGCTAGTAGTGGGCTATACTATTGAACTTGCTCTAAGAGGTTCCTTGGAGAGAGTCAAACATATGCCACTAAATGGTGCTTTAAGAAGCAAGTACTTAG
AGCAGGTACAATAGCAGGCTATAAGCCAGCTGCAAACATATTTTAAGAAGATAAATGAAGAGAGAGAAGAGCAGCGGACTACAGATTTGTAGCCAGCTGC
AGCACGGACTTCAAGACGTAGTGTGTATATGACATGTGGGACCAGGTATTAATAGTGTAGTATGTAACTATTGTATGAATGAGCTATTAGATTGGCTATA
GATAAATTGGAGCTAGTAGTTGGCTATACTATTGAACTTGCTCTTATACACTTTATTCTTTTTTTATATCAGTTCAATCCAACGAGACAGAACTTATTCG
TTTCACAACTTGATGACCCCCTTCCTTCTCTGCACTTTATTAACATTTTACATCGCTAATGCCACAACTAAAGCAGTATGTTTTTCATATAGAATCGAAC
ATGCAAGCATTTTTTTTAACTCCTTTGATGAACAAGAGTGCTTTATATGACATGGACAACAAAAACAGATGCTCATTGATTGTTGAATAATGCATATGCC
CCTGAAGCAGTTGGCCAAGGTCTATCTAGGTCTTGCATGGTCCTAATAGATCGACAACTCAAGTATGGCATAGTTTAAACAACCAGGTGTACTAGTTCTT
AGCCATAATCTAGTAAGAATACCACATGTATGAGTGGCTGAATACATGGTGTGAGATGGTGTGAGAAAAAATATTAGGGTGCAGAAAGCATGTGAAAGGA
AAAAAAGGATGGAGGTGAGAACAAACTAACAAATAAAAGTACCAAGGATAGTAGAGTGAATGTGAGGGGGGTTAGCTCAAGCTAGTTCCTTATAAAAGAA
CATTGGTCAAACCTCAAGTCAGCCCTGCAAAATCTACCTCTTCAGCCTTGTTGACAATGACACTAACCAAATAATAGATAATTATGCCCACGCAATCCAT
AGAACCCCAGTAGCTACCAACGTGCACGGTACATACAGAGCACACCTTTATTTCAAACCTAACTATTACCAGTTTTTAAAATTTTCAGATGCAGACTTGC
AGGGTAGCCAAGAGCTAAATGCCCCCAGATTAAAGTTGATTATGCAAACTGAGTGTAAGCCAAATAAATAATCAACATTCTAATAGAATATGCCAACTTC
TATAGGCTCTTAATCACACTGGTCTACTAACAATTTCATCCTAATCAACTTTGTTAGCTTTGCTTTGTTTCAGATAGATTTCCTGCAAGAAATGCAACTT
CTCTACATTTTCAAATAATGCTACATCAAAGAGAGAAGATTGACAAGAAAAAGGTTTTTTCCAAAAACAAATTCCGTCGCTCAATTCTAAGTTCAATTTT
CATCCCAAACTCCAAACCATTTGTATACTAGTATTTACAAAGAAAACATTGGCTGACTGGTGTGTGTCTCATGGCAGCAGAGAGAACAAAGAGCCACAAA
GACCCCAAGGTAGCAGTCAAGTAGGACAGAACCAGGCTGTATTCATGGATGGGATCATGTGCCCTGACTTTGGCACTTGGAAAACGTATAGGAAATGGTC
TCGAGTATATGACCAAAATTGAAGTCAACAAAGAGTTTATAGACCAATAGTGGACTCTACCGTTTTAAGTCTTTGATATATTAAAACACCGTGTATTACA
TGGCAAAGAATGGAAAAGAGGAAGTCCATCTTTTGTCTTATACACTGTGAGAGTAGATAAAATAAAATTTCCGAACATATAACTTGCTCAATATTCCTAG
TCATGGTAAGTCAGTGATTACAAATCAGAGAACAATTATGACTTACAAGTATCAATATCAACGTTAAGACATTATTAACCCGAAATACTAAATATTAACA
TAAATGATAAAAACATCCAAGCAACATTTTGCATTTCTTGACTAACATTATGTGGGTTTATGACTCAAAAAAATATTTGCAACATGCATAATCAACAATT
TTTTTAACCCTCTTCTATGAGCCAGTTGGTAGTGTGGAACTAAGCAAACGTGGCTATTACATTATGTTTCAATGTGCAAAGTCTAAAACTAAGTGAATAG
TGATCACTGATCAATTGCACTCTGGATAAAAATGGGAATGAAACATATAATCAACATGATGTATAAAGAAGATCTTGAATGCAACTAAGAACAACATAAC
TAACAGGCCAAAAGTAACAGCAATTCCAGCTAAATGCTTACATGAGCCACAGTAAAGGTACATGGCTTATATAATCAACAATAAGAAAAAAAACAAATCA
CCTCACTTATGATAACTCCATTTTCGAAAGTATACTTGAAATTCGGTTTATTATGGTTGAATGTACAAAAAAATGTAGAATTAAGTTATTCAAGCTTATT
GCCAATCGTTACTAGCAGAAAATCCACACTAGAAGAACAAGTTGTAAGTTGTAATAGGAGCTACTGAATGTATAACAGGATCCACTACAATTTAGCAGTT
CCCTAAGTAATTCAATTCATGCTTCAGGGACACATGTGAAGCACCAACGTTCATAGAAATTTTGCAACAGCCTTGCTAGAATACTCTAGTCAGCTTCACT
ACAAGTGGT