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Detailed information on CNT30105156


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696855Oryza longistaminataOryza sativa18.2228.3290.8298forward
CNT30555309Oryza longistaminataOryza glaberrima34.7637.1895.72187forward
CNT30464185Oryza longistaminataSaccharum spontaneum17.4723.3891.4994forward
CNT3068374Oryza longistaminataLeersia perrieri20.2618.688.07109forward
CNT30349851Oryza longistaminataEragrostis tef10.2221.3294.5555reverse complement
CNT30371376Oryza longistaminataOryza glumipatula53.3558.9395.12287forward
CNT30104073Oryza longistaminataOryza rufipogon48.732.4795.42262forward
CNT30578168Oryza longistaminataOryza barthii49.4452.0595.49266forward
CNT30117901Oryza longistaminataOryza nivara46.2841.7895.98249forward

Expression of CNT30105156

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MHTPLIWTHRGKAAEKIKQHKLNSGPHLSASHWSRCCLCLCCFSSFLYLSYSSWPPATTSVVTVSDV*

Sequence

>CNT30105156
TGGTTATCTTTCTGATAGATTTCTATGGCACTTCTGTGGCTCTCGATATAATTTGACACACTAAAATCTACTCAACTTAATGGTTTTTCAAATAGAATGG
AGAAAGTCAAGGTTCCATAGATATTGCTTCACTGGTACAAAGTACAAATAAAAATACATTGATACATGACACGGACAGAGCCATGCATACACCACTTATT
TGGACACACAGAGGCAAGGCTGCAGAGAAAATCAAGCAACACAAGCTGAACTCAGGGCCCCACCTGTCAGCCTCTCACTGGTCGAGGTGCTGCTTGTGCT
TGTGCTGCTTCTCCTCCTTCTTGTACCTCTCGTACTCGTCCTGGCCGCCGGCGACCACCTCGGTGGTCACCGTCTCCGACGTGTAGACGCCCTCGCCGTA
GGAGTCTACTCCGGTGGCCGGCTCGTCGTCCTTCTTGTGGTGGAACAGGTGGTGGTGCTTCTCCTCCGACATGGCTAATTAATTAATTAAGCTAGCTAGT
GATGACAATTAGGAGAATGGGATGGAAGTGACAATAAG