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Detailed information on CNT30105059


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003442, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692489Oryza longistaminataOryza sativa97.1100.4497.46904forward
CNT30553012Oryza longistaminataOryza glaberrima84.4386.6695.42786forward
CNT30595987Oryza longistaminataOryza meridionalis10076.3197.21931forward
CNT30369760Oryza longistaminataOryza glumipatula84.2191.2796.94784forward
CNT30101055Oryza longistaminataOryza rufipogon100.2196.7897.64933forward
CNT30575926Oryza longistaminataOryza barthii84.4393.7996.95786forward
CNT30116356Oryza longistaminataOryza nivara71.4362.3295.94665forward
CNT30603889Oryza longistaminataOryza punctata100.1183.5193.99932forward
CNT30550796Oryza longistaminataOryza brachyantha45.6533.4686.82425forward

Expression of CNT30105059

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MNGRSNLQWRIMDHRIGLSSRAIYDYMHSRIDAIMQVCN*

>peptide 2 (37 aa)
AVCPHLQKGLETLRFHAIKRNSVTPPCRFFATYSIPS*

>peptide 3 (35 aa)
MKTIIIKRIEDSILFFSLGSAGKIIQIVEQVQVAI*

>peptide 4 (29 aa)
MMVLIIQFLLLILKVLCQDKKSLCKPSKP*

>peptide 5 (29 aa)
MVDPIFNGESWTTELGYLPELSTTICIVE*

Sequence

>CNT30105059
AGCCGTTTGTCCTCATTTGCAGAAAGGGTTAGAAACCCTTAGATTTCATGCCATCAAGCGTAACAGTGTAACCCCACCATGTCGTTTCTTTGCTACTTAT
AGCATCCCAAGTTGATGATCCATTTCATGTTTACTCTCCTTTTTCAGATGCATACTATGATGTCCAATGTGGGTGTCTGAACTGAAATCTGAACTCTGAA
CTCTGAAGGCTGTTGTTTCCATCAGGGTGCATTGGTTCAGCAGCGATCGGTGATCTATGTTTTCATATTTGATCACGTTCTACCGGGCTTTTTTGATGGA
AATGAAGGTAATTGGAGGAGTTCTATCTGTCTGATGGAATTCAGAACCAAAATCCGAATTCCACAAAATGGCTAGAGGCAAATTTTTAGGGCTATTTGCA
ATTCCACAACCACAAGCATGGCCAACTGGTAGTTCTCCAAGTAAAAGAAGTTAGGAGCTGGTTATGATGGTACTAATTATTCAGTTTCTTCTATTGATCC
TGAAAGTTCTATGCCAGGATAAGAAAAGCTTGTGCAAACCCTCCAAGCCATGAAAACAATTATCATCAAGAGAATTGAAGATTCTATTCTTTTTTTTTCC
TTAGGATCTGCAGGGAAAATTATTCAGATAGTGGAACAGGTTCAAGTAGCCATTTGAAACTCAACACGACTTTATATCAAGAACAAATGAACAATGAATG
GTAGATCCAATCTTCAATGGAGAATCATGGACCACCGAATTGGGCTATCTTCCCGAGCTATCTACGACTATATGCATAGTAGAATAGATGCAATCATGCA
AGTGTGCAACTAGTAATTTTTTTTTTTCTGAAGGAGATGAGATTAGGTATAGCATGTAATGGTCCTGGTATATAATGCCATGGCACTCTCAACTTGCATG
TTAACAATGCTAGTCCTGCAGACCTTGCCAA