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Detailed information on CNT30105031


BLAST search results

BLAST vs Swiss-Prot:
sp|P51414|RL261_ARATH, E-value = 2e-63

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690207Oryza longistaminataOryza sativa28.5369.494.09220forward
CNT30522907Oryza longistaminataSetaria italica36.3249.5690280forward
CNT30536141Oryza longistaminataEucalyptus grandis28.460.3382.19219forward
CNT3044269Oryza longistaminataPrunus dulcis23.9930.9982.16185forward
CNT30181670Oryza longistaminataSecale cereale33.9891.6189.69262forward
CNT3082886Oryza longistaminataBrassica juncea17.7753.3185.4137forward
CNT30230907Oryza longistaminataAnanas comosus33.3386.5387.16257forward
CNT30714885Oryza longistaminataMalus domestica golden26.5942.0985.85205forward
CNT30720826Oryza longistaminataTriticum spelta43.9756.8887.91339forward
CNT30597158Oryza longistaminataOryza meridionalis47.0852.9298.62363forward
CNT30355705Oryza longistaminataLactuca sativa28.5360.2780.45220forward
CNT30371509Oryza longistaminataOryza glumipatula47.0862.6996.42363forward
CNT30149302Oryza longistaminataBrachypodium distachyon43.0655.5290.06332forward
CNT30115704Oryza longistaminataOryza nivara13.4930.7797.12104forward

Expression of CNT30105031

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MERTLYLWRSSVESAADMRTRRTDDGAVKCAFRHLRRELVTRGLRFMAAEEVVELGFSEEGDEWVA

>peptide 2 (95 aa)
MDHPPAAVDLHHLALAALVAPPHHLHLVVLADGDGADVVLVAELGGERGGHEDAADGRRCREVRLPALAPGARHARVALHGGGGGGGARVFGGRG*

>peptide 3 (44 aa)
MALRSLSSLSLVTTTLDGWIPTLTVDPFTFSLVMRSTWITHRRR*

>peptide 4 (44 aa)
MSSVLDLSKSKGIRLDPHKVPKLTLTNSFIRDKVAGISSSIKIN*

>peptide 5 (40 aa)
MMIIIGETVRTERKGIYLPEPNRSPGARPRRRRRRQRPRR*

Sequence

>CNT30105031
GACCATTCAGCACCAGATTTGAACGTTCACTAAAGCATGAGCAATAAAACATGTAATGAGTTCAGTTCTTGATCTATCAAAATCCAAAGGCATCAGACTA
GATCCACATAAGGTTCCAAAACTCACGTTGACAAACAGTTTCATCAGGGATAAAGTAGCAGGGATTTCAAGTAGCATTAAAATTAACTAGATGATGATAA
TAATAGGAGAGACGGTACGAACAGAGAGGAAAGGGATATATCTCCCCGAGCCTAATCGATCTCCTGGAGCGAGGCCCCGGCGGCGCCGGCGGCGGCAACG
TCCTCGGCGGTGAACTTGCCCTTGGCCTTGTCGGCGGCGCGGCCGCTGGCCTTGCGGTCGAGGATGGCCTTGCGGTCCTTGTCGAGCTTGAGCTTGGTGA
CGACGACCTTGGATGGGTGGATCCCGACGTTGACGGTGGACCCGTTCACCTTCTCCCTGGTGATGCGCTCGACATGGATCACCCACCGGCGGCGGTAGAC
CTGCACCACCTTGCCCTCGCGGCCCTTGTAGCTCCCCCTCACCACCTGCACCTCGTCGTCCTTGCGGACGGGGATGGAGCGGACGTTGTACTTGTGGCGG
AGCTCGGTGGAGAGCGCGGCGGACATGAGGACGCGGCGGACGGACGACGGTGCCGTGAAGTGCGCCTTCCGGCACTTGCGCCGGGAGCTCGTCACGCGCG
GGTTGCGCTTCATGGCGGCGGAGGAGGTGGTGGAGCTAGGGTTTTCGGAGGAAGGGGATGAGTGGGTGGCG