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Detailed information on CNT30105029


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7EAG4|DMC1B_ORYSI, E-value = 4e-42

BLAST vs NONCODE:
NONORUT002023, E-value = 3e-75

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30530746Oryza longistaminataEucalyptus grandis21.2629.4382.6598forward
CNT3071898Oryza longistaminataQuercus suber38.8347.9983.24179forward
CNT3068273Oryza longistaminataLeersia perrieri101.0861.6488.63466forward
CNT30371297Oryza longistaminataOryza glumipatula62.6981.8795.5289reverse complement
CNT30104659Oryza longistaminataOryza rufipogon98.794.0190.77455forward
CNT30578572Oryza longistaminataOryza barthii95.0193.5991.1438forward
CNT30582636Oryza longistaminataEchinochloa crusgalli51.6348.9789.08238forward
CNT30496955Oryza longistaminataDigitaria exilis51.6352.8986.13238forward
CNT30118011Oryza longistaminataOryza nivara79.1892.1789.86365forward
CNT30593120Oryza longistaminataEragrostis curvula36.2359.0191.02167forward
CNT30604793Oryza longistaminataOryza punctata95.0194.692.69438forward

Expression of CNT30105029

Peptides detected in this lncRNA

>peptide 1 (28 aa)
MVAACASTWPPAGFFGSVMNIPPPGSAIT

>peptide 2 (30 aa)
MQKFTWRNLNNLNTGSTLSEHSVFRIHYST*

Sequence

>CNT30105029
AACCTCTTATATTTTCACTTAAGACAATACTAGCACTTGTTTCAGTACAACTGTTGATCACATAACTCATAATACCCAATGTGAGATACAACCGTCTGGA
TAAATGAGGTTGCCTATTTCCTCAGCAGTGGCAAAAACATAGCAGCAGCAGCAGTTTTGTCAATGTACCTAACCTATATGGCCTATGCAGAAATTTACTT
GGAGAAACCTGAACAATTTGAACACAGGAAGCACCCTCAGTGAACATTCAGTCTTTCGCATCCATTATTCCACCTGATGTTACCTGGAAAACGTCTTCTC
CCTCAGGCAGGTTAGGGGCATCAAAGATCTTGCAGACACGCTGCTCTCCTTTGCCTTTCCTCAACATCAACCGGATGGTGGCTGCATGCGCCAGCACATG
GCCTCCCGCTGGTTTCTTCGGGTCAGTTATGAACATTCCACCACCTGGGTCCGCAATCACT