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Detailed information on CNT30105015


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000951, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555717Oryza longistaminataOryza glaberrima8.6932.7692.48133reverse complement
CNT30369253Oryza longistaminataOryza glumipatula19.831.2788.12303forward
CNT30100448Oryza longistaminataOryza rufipogon10.253.4292.31156forward
CNT30574796Oryza longistaminataOryza barthii29.4829.9184.92451reverse complement
CNT30116562Oryza longistaminataOryza nivara26.5425.6589.9406reverse complement

Expression of CNT30105015

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MEALIPRTQATTTSLPLVEDRIDAAQPESKNSSK*

>peptide 2 (48 aa)
MQTPADAFATDAYSVLRVKSSTESASIPMSNLVHILSNLVVNRHLKNI*

>peptide 3 (39 aa)
MLSQLMHTLFFESNLLPNPLRFQCRTWFISYQIWSLTDT*

>peptide 4 (48 aa)
MIHICHRGYQHYVLGLVPNRGFVGSGSRRFPYDTLLSGAVVRRYQIRM*

Sequence

>CNT30105015
CTTGCTGAGTACGAAAGTACTCACCCTTGCTCTATATATATATATATATAGTTCCTCCGTCTTGAAGAGAAGATGAAGTGAAGCGAAGATTAGGGTTTCG
TCCTGGTTCCCAGCCGTCGCCTGTGGTGTTGGGTGTTAGTTCGTTGGTTCCGCTGCTGCTGCTGCTGTTGGTGTTTCCTCGTCCGCGTCGTCGGTTGTAT
TCTCAGGCTGTCCTGAGCTGCAACCTAAGTTAAGGTAAATAAGTCCTCTATTTATTTTAAGGATTGCTATGATTCATATTTGTCACCGTGGGTACCAGCA
CTATGTCCTGGGACTGGTACCGAATCGCGGTTTCGTAGGAAGCGGTTCGCGTCGTTTTCCCTACGACACGCTCCTGTCAGGTGCTGTTGTACGGCGGTAC
CAGATTAGGATGTGATACAAGCTAGATATCATGATTATAGATCTTACTTAATAGATTGAACTCAACCGATGCAACATTAAGCATAAAGATAAGTATAAAA
TCTAGGCAAGATGATGAAAACCTATGAGAGATGGTAGATATACGATATAATCTAGATTAATAACAAAACATAACCATATCGGTCACTTCCTAATAATAAG
AAACAGCCGATAACAAGCTATATAGCGCAACTAACAGAGATTATAAAGCATATATGATAACTCGACGAATTACATAAACAGGATTAGAGTATCATAAAGA
TGGAAGCACTAATCCCGAGAACGCAAGCCACCACGACAAGTTTACCTCTAGTTGAAGATCGAATCGATGCAGCTCAACCCGAAAGCAAGAACTCATCGAA
ATAGAACGAAAGTAAAAAGGGTGGCGATGCGCCGAGGTTGATTGAACTATTGTTGTTTGATTACATGGGTTCGGACTATATTTATACCCGAGGTACAAAA
TATGTCCTTACCGGACACGACTCTTATCTCTAACAAATTCTAAGATACCATAAGTCTTTGCGGCAGACTTTTGCCCAAACATATTTCGAAGGAAATTACA
CAAAATATCCTAATTAATAGATACAATTGCCTATCTGAGAGATTTATCTCCATCGTGGCAATCCTTGCGAAGCACGTTGATTGATTCTGGAAACAGCCTT
GAAGCCATTGCCGTCAGAATTGGCTGTACTGACTCTATCAGTTGTATCGGCTGTCCTCTGTCCGATCCATCTTAGCCGATGCAGACTCCAGCCGATGCTT
TCGCAACTGATGCATACTCTGTTCTTCGAGTCAAATCTTCTACCGAATCCGCTTCGATTCCAATGTCGAACTTGGTTCATATCTTATCAAATTTGGTCGT
TAACAGACACCTAAAAAATATATAATTGGCTGTGAGACACTGTAAAATCGTGTCGTTGCTGATGGACACCACAAAATTCATGTAATTTGTTGTAGGACAC
CCAAGACAATATTTTATCATTTCTGATCAAAAAGATGGGAGAGAAATTTTGAAAAGACAAAATTGCTCTCAGCCCTATCTAATCCCCACCGCCGGCACTC
GCATCTCAGCGCCGCTCGCCATCTCCCGCC