Detailed information on CNT30104997


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004888, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693421Oryza longistaminataOryza sativa67.571.5293.22457forward
CNT30553781Oryza longistaminataOryza glaberrima60.2769.3992.4408forward
CNT30101758Oryza longistaminataOryza rufipogon56.7269.0692.45384forward
CNT30576428Oryza longistaminataOryza barthii55.167.0992.76373forward

Expression of CNT30104997

Peptides detected in this lncRNA

>peptide 1 (39 aa)
IPHRRIRRIDIPPPPRRETTTMINLQVDYNDSSKSSTCI*

>peptide 2 (32 aa)
DPPPPDPTDRHPSSAATRDHNNDQSASRLQRQ*

>peptide 3 (32 aa)
MYMNLAGIHGRSFRRRRIGRPWTVAGGNDDSA*

>peptide 4 (63 aa)
MAGHFDVDGSVGHGRWPEVTTTVPNPFCFHVLLFQHSELTVTYSREGICDANYTIKPIVFQAN*

>peptide 5 (47 aa)
MSYCFNTLSLLSPTHVKAYVMQIILLNLLFFRPTELSSRLVGDISYA*

Sequence

>CNT30104997
GGATCCCCCACCGCCGGATCCGACGGATCGACATCCCTCCTCCGCCGCGACGAGAGACCACAACAATGATCAATCTGCAAGTAGACTACAACGACAGTAG
TAAAAGCAGCACATGTATATGAATCTGGCCGGAATTCATGGCCGGTCATTTCGACGTCGACGGATCGGTCGGCCATGGACGGTGGCCGGAGGTAACGACG
ACAGTGCCTAATCCCTTTTGCTTCCATGTCTTATTGTTTCAACACTCTGAGCTTACTGTCACCTACTCACGTGAAGGCATATGTGATGCAAATTATACTA
TTAAACCTATTGTTTTTCAGGCCAACTGAATTGAGTAGTAGACTAGTAGGAGATATTTCCTATGCTTGAATGGTGATTGGTCCATGCTTGAAACGAATAA
GAAGTTCTTTTATTTAATTACTCTGCCCAATTAGGGTCTAGTGTCAATAGGATATATAGCTAATCATATCAGAGATGTTTGTTAACTTGACTGTTCTGAT
TCCAATCTTGTTAAAATATATGTGCATCTGAGTGTGTGCTACATGCATATGTTTGATCACCGGAGCTAGATGATAGATCATGTTACTGCCAAATTAAAGC
CGCATTATTACATACACATGCCTTACATGGATATCAGCAGATGTCAGTTTTGAGAAATTGACAATAATTAACCGGCC