« Back to Oryza longistaminata search


Detailed information on CNT30104991


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6Z4N6|40G2_ORYSJ, E-value = 2e-50

BLAST vs NONCODE:
NONZMAT000139, E-value = 3e-83

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671877Oryza longistaminataSetaria viridis83.9799.590.95199forward
CNT30520655Oryza longistaminataSetaria italica92.4188.3192.24219forward
CNT30180108Oryza longistaminataSecale cereale85.2392.2491.58202forward
CNT30554471Oryza longistaminataOryza glaberrima92.8339.9390.45220forward
CNT30658643Oryza longistaminataTriticum dicoccoides91.1448.7693.52216forward
CNT30450022Oryza longistaminataSaccharum spontaneum80.1718.3897.37190forward
CNT30680880Oryza longistaminataTriticum urartu91.1441.7893.52216forward
CNT30341741Oryza longistaminataEragrostis tef86.533.8395.61205forward
CNT30361377Oryza longistaminataSorghum bicolor92.4119.4589.04219forward
CNT30596661Oryza longistaminataOryza meridionalis92.4161.1798.63219forward
CNT30102585Oryza longistaminataOryza rufipogon92.8362.598.64220forward
CNT30496422Oryza longistaminataDigitaria exilis90.334.6885.05214forward
CNT30117229Oryza longistaminataOryza nivara87.3435.3292.27207forward
CNT30593977Oryza longistaminataEragrostis curvula92.4198.6592.69219forward
CNT30556620Oryza longistaminataPanicum hallii92.8322.3690.45220forward
CNT30551356Oryza longistaminataOryza brachyantha61.1841.9190.34145forward

Expression of CNT30104991

Peptides detected in this lncRNA

>peptide 1 (78 aa)
LVVVPGDLPALVVALAPLPEDDGGAVADAAVVLVAVEGVEVEAGVVDHADAAEALADVLALRPQHRRVLVLRVERHQLH

>peptide 2 (40 aa)
GSRPWGSSSSGCRPCTTPRGRRWCRRGRRRGPCRRGRRRS*

>peptide 3 (30 aa)
MRMQRKPLPTSLLSVHSTDASSYSGLNGTSF

Sequence

>CNT30104991
CTGGTAGTCGTCCCTGGGGATCTTCCAGCTCTGGTTGTCGCCCTTGCACCACTCCCAGAGGACGACGGTGGTGCCGTCGCGGACGCCGCCGTGGTCCTTG
TCGCCGTGGAAGGCGTCGAAGTTGAGGCGGGTGTTGTTGACCATGCGGATGCAGCGGAAGCCCTTGCCGACGTCCTTGCTCTCCGTCCACAGCACCGACG
CGTCCTCGTACTCCGGGTTGAACGGCACCAGCTTCAC