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Detailed information on CNT30104905


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521026Oryza longistaminataSetaria italica15.0928.1494.64112forward
CNT30589485Oryza longistaminataMusa acuminata12.835.4584.2195forward
CNT30596265Oryza longistaminataOryza meridionalis14.2942.4100106forward
CNT30149311Oryza longistaminataBrachypodium distachyon15.0952.5894.64112forward

Expression of CNT30104905

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MPPAPPPPPAMAGASPAMDLDRRGGGRRWRRRRRRRI*

>peptide 2 (99 aa)
HGEGDREGPVVHLGVEDVLVVDDDGEGEEDPDADVAVXXXXDPRRRHAAGAPAAAGHGWRLPGDGSGSARGWEEVEEEEAEADLMILGGRRRWGRGGGV*

Sequence

>CNT30104905
CCATGGTGAGGGAGATCGGGAAGGGCCAGTTGTACATCTTGGGGTCGAGGATGTACTTGTTGTAGACGATGACGGCGAAGGAGAGGAAGATCCAGACGCC
GACGTAGCAGTANNNNNNNNNNCGGACCCCCGCCGCCGCCATGCCGCCGGCGCCCCCGCCGCCGCCGGCCATGGCTGGCGCCTCCCCGGCGATGGATCTG
GATCGGCGAGGGGGTGGGAGGAGGTGGAGGAGGAGGAGGCGGAGGCGGATCTGATGATTTTGGGGGGGAGGAGGAGGTGGGGAAGGGGTGGGGGGGTTTA
GGTGAAGGGGAGCTTGGACTGGGCGCGTTGGCCACGTGGAAAATCGACTGGTTTTGGTTGGGGATTTTTTTTTTAATTTGGGCTTGACGGGACGCTTTGA
CTTGTCTTTTGTTCTTTCTTTTTTGTATTTTTTTTATGAATCTCTTTTACTTCTTGTTGTGCTAGCAAATTGAGCTGTTACTTGCAGTATATCGAGATAT
GAACTGTTATTTGCAGTGGTTTATATGAAGGATTTTGATTTTACTAGCTATGTGATCCGATCCACTTTGTGAGGTCCAAATATCAGGCAGACTCATCATC
ACCATCACCAGAAACGTTAAAAGGAGTAAGGAGTAAGAAGTTATACTTTTTTTAAGGGTAAAGCCATACTATATTCTTGTGCAATATGGCGTGTATATTA
TCATTTGAAGAAAGAACATTAATTGCAAAAGGTATTGCCTGC