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Detailed information on CNT30104896


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XA40|RGA3_SOLBU, E-value = 3e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521356Oryza longistaminataSetaria italica29.3736.9485.59222forward
CNT30553900Oryza longistaminataOryza glaberrima67.4672.5597.84510forward
CNT30101614Oryza longistaminataOryza rufipogon67.4652.296.67510forward
CNT30576379Oryza longistaminataOryza barthii36.984.2997.85279forward

Expression of CNT30104896

Peptides detected in this lncRNA

>peptide 1 (33 aa)
HILLCDVGRRICLIVHQNSCSQVPPLFSFLETE*

>peptide 2 (29 aa)
MMYSQGVCFFVTYSCRAIWYFTHVLTNHLI

>peptide 3 (41 aa)
MEDRAKRKTSLQYGRQMIVTQPQCCKWQTFQLLHNFLAYNF*

>peptide 4 (36 aa)
MLVVTDENPLATDSMVSLGPAVTSLLDYRRSDRWLL*

Sequence

>CNT30104896
CACATATCCTCCTTTGTGATGTTGGAAGAAGGATCTGCTTAATAGTTCATCAAAATAGCTGCTCCCAAGTTCCTCCATTGTTCTCCTTCCTGGAGACTGA
ATGAACCCAAGGGCCATCCATATTTGCACCAAGTTTTCCTTTTCAAACACATAATCTTTATGGAAGACCGAGCAAAACGCAAAACATCGCTTCAATATGG
CAGGCAAATGATTGTAACTCAGCCTCAGTGCTGCAAGTGGCAGACCTTTCAACTTCTTCACAATTTCCTTGCCTATAATTTCTAAATGTGGGTGCGAACT
GGAGTCACCATCAGCAAATGCGTAGCTCCTGAACAAGTTCCAGCAATCATTTTCAGATAACTGCTTTAGAAAGGTCCTCATTCCAAACGTCATCAAGTAC
TAGAAGAAACCTTTTACCTTCCAGCTTTTTTGAGAGATCTTCTTGAAGCAAGTTCATGTTGGTCGTGACCGATGAGAACCCACTGGCAACTGATTCAATG
GTTTCCTTGGGACCTGCTGTAACATCTCTCCTGGACTACCGACGATCTGATCGGTGGCTTCTATGATTTGTACGCTCAATAGGATCACGACATCTGAGGA
TAGGGTTTGGCCCATATGAGACATCCTGGTGGCGAAAACGACATTTGTCCGATGTAAAAGAGAAATATGATGTACTCTCAAGGCGTCTGTTTTTTTGTAA
CTTACAGTTGTAGAGCTATCTGGTACTTCACTCATGTGTTGACCAACCATCTGATC