Detailed information on CNT30104816


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30581642Oryza longistaminataEchinochloa crusgalli21.784.4987.193forward
CNT30594934Oryza longistaminataEragrostis curvula13.5824.8989.6658reverse complement

Expression of CNT30104816

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MHHVVGDCSSHLSRGRKGRMEFSWKVRFIRHVKAEIRGHMP*

>peptide 2 (57 aa)
MTSHIFSLPRAINSCASSQASWMKQFQRDSFWCQPSTSQDSRTADASCSWRLLFPSL*

>peptide 3 (45 aa)
MSPSLHATAGATHRIGTPHLIQGSWHVSILCICRRRSRASPPTHP*

Sequence

>CNT30104816
ATGTCTCCATCCCTGCATGCGACAGCAGGAGCCACACATAGGATAGGTACTCCACACCTGATCCAAGGCTCTTGGCATGTAAGTATCCTCTGCATCTGCC
GGCGGAGAAGCAGAGCATCTCCACCCACACATCCCTGATGACATCCCACATCTTCTCATTACCTAGAGCCATCAACTCTTGCGCGAGCAGCCAAGCGTCG
TGGATGAAGCAGTTTCAAAGAGATTCCTTCTGGTGCCAGCCATCAACATCTCAGGATTCGCGAACAGCAGATGCATCATGTAGTTGGAGATTGCTCTTCC
CATCTCTCTAGGGGAAGGAAGGGGAGAATGGAATTCAGTTGGAAGGTAAGATTTATCAGGCATGTTAAAGCAGAAATCCGTGGCCACATGCCATAGAAGG
ACAATCTCGTCGAATGGTCTCTCTAAG