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Detailed information on CNT30104767


BLAST search results

BLAST vs Swiss-Prot:
sp|P16024|RPOC1_MAIZE, E-value = 6e-94

BLAST vs NONCODE:
NONORUT002450, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30220823Oryza rufipogonHordeum vulgare100.1718.6692.37590forward
CNT30314046Oryza rufipogonCamelina sativa46.867.284.42276forward
CNT30716479Oryza rufipogonMalus domestica golden38.274.0179.11225forward
CNT3057109Oryza rufipogonAmborella trichopoda69.118.1579.12407forward

Expression of CNT30104767

Peptides detected in this lncRNA

>peptide 1 (39 aa)
NGYKQIVRPSIKVGWKAYMPNLCRVDALFNGTGCPLITS*

>peptide 2 (52 aa)
MQGRCSIQRYRMSPYNFLKYFPYNGSFSQNFLLAILTLEVARFVIKSQITNS*

Sequence

>CNT30104767
TAATGGGTATAAACAAATAGTACGCCCCTCTATTAAAGTGGGTTGGAAAGCCTATATGCCTAATCTATGCAGGGTAGATGCTCTATTCAACGGTACAGGA
TGTCCCCTTATAACTTCTTGAAGTATTTCCCATACAATGGTTCCTTTTCCCAAAATTTTCTTTTAGCAATCTTAACATTAGAAGTAGCACGTTTCGTGAT
TAAATCGCAAATTACAAATAGCTGAAAAAGCTTTATTGCTATCTCTAGAGGTAACCCACATTGATGTAATGAAAGTGAAGGACCCACAACAATGACAAAA
CGCCTCGAGTAATCGACCCGTTTCCCAAGCAGAGTTTCGCGAAACCTCCCCTCTTTACCTTCAATTACATCTAGAAGTGATTCGTATACTTTATTGTGAC
CATCCCTCGTTGGTTGCCCGCGGGACCCACTATCAAGAAGTGTATCCACGGCTTCTTGTACCAATTTTTCCTGGCACATTACTAAATCTGCTGGCGCTAA
TTCACTTCGTTTTAGGCTATAGGTAAGATTATTGTTCCGAGGGATAACTCTCTTATAAAGTTCATTAATATCCGAAGTCACCACTTTAT